Acta Veterinaria et Zootechnica Sinica ›› 2024, Vol. 55 ›› Issue (11): 5018-5034.doi: 10.11843/j.issn.0366-6964.2024.11.020
• Animal Genetics and Breeding • Previous Articles Next Articles
Wanxin WANG(), Zijin YUAN, Gongquan ZHU, Yuqing WANG, Ying XUE, Jing GE, Minmeng ZHAO, Long LIU, Daoqing GONG, Tuoyu GENG*(
)
Received:
2024-01-16
Online:
2024-11-23
Published:
2024-11-30
Contact:
Tuoyu GENG
E-mail:1263210729@qq.com;tygeng@yzu.edu.cn
CLC Number:
Wanxin WANG, Zijin YUAN, Gongquan ZHU, Yuqing WANG, Ying XUE, Jing GE, Minmeng ZHAO, Long LIU, Daoqing GONG, Tuoyu GENG. ACSBG2 Gene Mediates the Response of Goose Liver to Nutritional Changes through Steroid Hormone Synthesis and Cell Adhesion-related Pathways[J]. Acta Veterinaria et Zootechnica Sinica, 2024, 55(11): 5018-5034.
Table 1
The sequences of primers for qRT-PCR"
基因Gene | 引物序列(5′→3′) Primer sequence (5′→3′) | 产物大小/bp Product size | 退火温度/℃ Annealing temperature |
ACSBG2 | F: AGGTGGCCAGTGGATAAAGC | 214 | 62 |
R: ATGACAGGCCTCAGGAGAGT | |||
UBC | F: AGGGTGGATTCTTTCTGG | 243 | 55 |
R: ACTGAGTTTGGAGGGAGC | |||
CYP8B1 | F: TGATGGACCCCTTCTGCTTT | 227 | 60 |
R: CGGCTTGGAAAACATCAGCT | |||
ADIPOQ | F: CAAGTTCCTCTGCAGCATCC | 134 | 61 |
R: TGTTGGTCTGGAACTGGTCA | |||
COL1A1 | F: CAGATCGAGAACATCCGCAG | 248 | 61 |
R: TGCTTCTTCTCCTTGGGGTT | |||
EREG | F: CTGCTCTTCCTCGGTTACCT | 152 | 62 |
R: GGCTTGCATCTGGTTATCCC | |||
ANGPT4 | F: GACAACGACAACTGCCTCTG | 126 | 61 |
R: GTTGAGCTTGCGGATGTTGT | |||
NEU3 | F: CTTCTGCCTCTTCGCCCT | 176 | 59 |
R: AATTAAAAGCCGCACGACCC | |||
LCAT | F: TGTGGGAGGACATGAAGGAC | 163 | 62 |
R: GTGTCATCCCCATCCCCATA | |||
HES1 | F: GAGTGCATGAACGAGGTGAC | 109 | 62 |
R: CGTTGATCTGGGTCATGCAG | |||
FBXO32 | F: AAGCTCTGCCAGTACCACTT | 242 | 60 |
R: TCTTGCGGTGAAAGAGAGGT | |||
FAM32A | F: ACGGAAGAAGAAGAAGGCGA | 153 | 61 |
R: CTCTCCATTTGCCGCTTCTC | |||
HLA-DRA | F: CGTCCATCATCACCATCACG | 116 | 62 |
R: GGGCAGGTAGGAGAACTTGT | |||
TMEM14A | F: CGGACTAGTAGCATGCCTGA | 141 | 61 |
R: TCCACTGAAACACTCTGCCT | |||
RPL18A | F: CAAGTCCCGGTTCTGGTACT | 92 | 62 |
R: ACTTCTCATACACCTGGCCG | |||
C1QA | F: AGCATCACCAAGAACAGGGA | 155 | 61 |
R: CTGTAGATCTGGCTGCCCTT | |||
THBS2 | F: AGGACAGGCAATCTAGAGGC | 209 | 62 |
R: GTAGTTCTCCCCTGCCACTT | |||
SIGLEC1 | F: CCAAAAGACCGTGGTGTACC | 150 | 62 |
R: CGGAACTTATAGGACCCGCT | |||
SCARA3 | F: TACCTCAACAAGTCCCTCGG | 164 | 62 |
R: ATGTTCCTCAGCATCTCCCC | |||
CNTNAP1 | F: CCGGCATCAACAACTACGTG | 207 | 62 |
R: CTGCGAACTCCAGCTTCTTC | |||
CLDN3 | F: GAAGGGCTGTGGATGAACTG | 221 | 62 |
R: GAGACGATGGTGATCTTGGC | |||
STX1A | F: ATCCGAGAGCTGCATGACAT | 204 | 60 |
R: ACCAAGGATCACACAGCAGA | |||
RPL27 | F: AGCGAAGAGGTCCAAGATCA | 195 | 60 |
R: TTCTTGCCCGTCTTGTACCT | |||
RPL18A | F: CAAGTCCCGGTTCTGGTACT | 225 | 62 |
R: GCTCCCATATCACGGTAGCA | |||
ENSACDG00005014361 | F: GAACCCCAGCTACCAAAACG | 153 | 62 |
R: CCACCAAAGGCACCTGAATG | |||
ENSACDG00005013890 | F: CTGTCCTGGTGCCTCATGTA | 177 | 62 |
R: GAAGGGCAGGAAGGAAGAGT | |||
ACTB | F: CAACGAGCGGTTCAGGTGT | 92 | 61 |
R: TGGAGTTGAAGGTGGTCTCG |
Fig. 3
Effects of nutrition-related factors on ACSBG2 expression in goose primary hepatocytes(n=6) A-D. Effect of different concentration of sodium oleate, palmitic acid, glucose and insulin on the gene expression in goose primary hepatocytes, respectively. * means P < 0.05, the same as below"
Fig. 6
The volcano map (A) and the clustered heat map (B) of DEGs A. The volcano map of differentially expressed genes, the up-and down-regulated genes are indicated by red and green dots, respectively; And the grey dashed line indicates the threshold line of differential gene screening criteria; B. The clustering heat map of differentially expressed genes, horizontal coordinates are sample names. The ordinate is gene ID. The darker the red color indicates the higher the expressive level, and the darker the green color indicates the lower the expression level. The number on the right represents the value after homogenization"
Table 2
The top10 up- and down-reguated differentially expressed genes"
基因表达变化Gene expression change | ID | 基因Gene | 倍数的对数log2(fold change) | Padj |
上调Up-regulate | ENSACDG00005017918 | ASCBG2 | 2.88 | 7.67×10-285 |
ENSACDG00005010507 | - | 1.20 | 1.73×10-55 | |
ENSACDG00005010937 | RPL18A | 1.74 | 1.35×10-27 | |
ENSACDG00005013321 | GPNMB | 1.55 | 2.27×10-14 | |
ENSACDG00005003993 | - | 1.11 | 6.81×10-14 | |
ENSACDG00005011759 | - | 1.01 | 3.85×10-13 | |
ENSACDG00005010479 | TMEN14A | 1.03 | 1.39×10-12 | |
ENSACDG00005012911 | TMEN52 | 1.03 | 3.10×10-11 | |
ENSACDG00005013890 | - | 1.30 | 3.39×10-10 | |
ENSACDG00005015365 | - | 1.26 | 3.87×10-9 | |
下调Down-regulated | ENSACDG00005007930 | - | -1.21 | 3.76×10-54 |
ENSACDG00005008996 | C1QB | -1.55 | 5.37×10-53 | |
ENSACDG00005009001 | C1QA | -1.35 | 6.34×10-50 | |
ENSACDG00005014182 | SIGLEC1 | -1.21 | 3.08×10-41 | |
ENSACDG00005016869 | - | -1.17 | 1.22×10-38 | |
ENSACDG00005015981 | COL1A1 | -1.01 | 2.45×10-35 | |
ENSACDG00005008999 | C1QC | -1.47 | 2.62×10-35 | |
ENSACDG00005015382 | HLA-DRA | -1.014 | 2.62×10-35 | |
ENSACDG00005009902 | - | -1.23 | 2.30×10-27 | |
ENSACDG00005018406 | DBNL | -1.20 | 1.33×10-25 |
Fig. 8
The KEGG pathway enrichment analysis of DEGs The scatter diagram showing the KEGG enrichment analysis of the DEGs, the abscissa is the ratio of the number of DEGs annotated to the KEGG pathway to the total number of the DEGs, the ordinate is the KEGG pathways, the sizes of the points represent the number of genes annotated to the KEGG pathway, and the colors from red to purple represent the significant level of enrichment. A. The up-regulated DEGs; B. The down-regulated DEGs"
Fig. 10
Oil red O staining analysis of goose primary hepatocytes transfected with empty vector (control)or ACSBG2 overexpression vector A. Goose primary hepatocytes transfected with empty vector pcDNA3.1(400×); B. Goose primary hepatocytes transfected with ACSBG2 overexpression vector(400×); C. Quantitative analysis on the oil red O staining"
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