Acta Veterinaria et Zootechnica Sinica ›› 2023, Vol. 54 ›› Issue (11): 4724-4734.doi: 10.11843/j.issn.0366-6964.2023.11.026
• PREVENTIVE VETERINARY MEDICINE • Previous Articles Next Articles
JIANG Shengqiang, HU Jing, CHEN Hongying*
Online:
2023-11-23
Published:
2023-11-26
CLC Number:
JIANG Shengqiang, HU Jing, CHEN Hongying. Expression Analysis of CircRNAs in A549 Cells Infected with H1N1 Influenza A Virus[J]. Acta Veterinaria et Zootechnica Sinica, 2023, 54(11): 4724-4734.
[1] | SALOMON R, WEBSTER R G. The influenza virus enigma[J]. Cell, 2009, 136(3):402-410. |
[2] | PLESCHKA S. Overview of influenza viruses[J]. Curr Top Microbiol Immunol, 2013, 370:1-20. |
[3] | DE VRIES E, DU W J, GUO H B, et al. Influenza A virus hemagglutinin-neuraminidase-receptor balance:preserving virus motility[J]. Trends Microbiol, 2020, 28(1):57-67. |
[4] | RUSSELL C J, WEBSTER R G. The genesis of a pandemic influenza virus[J]. Cell, 2005, 123(3):368-371. |
[5] | KRAMMER F, SMITH G J D, FOUCHIER R A M, et al. Influenza[J]. Nat Rev Dis Primers, 2018, 4(1):3. |
[6] | ACHDOUT H, ARNON T I, MARKEL G, et al. Enhanced recognition of human NK receptors after influenza virus infection[J]. J Immunol, 2003, 171(2):915-923. |
[7] | GORAYA M U, WANG S, MUNIR M, et al. Induction of innate immunity and its perturbation by influenza viruses[J]. Protein Cell, 2015, 6(10):712-721. |
[8] | BOHANNON C D, ENDE Z, CAO W P, et al. Influenza virus infects and depletes activated adaptive immune responders[J]. Adv Sci (Weinh), 2021, 8(16):e2100693. |
[9] | TOPHAM D J, DEDIEGO M L, NOGALES A, et al. Immunity to Influenza Infection in Humans[J]. Cold Spring Harb Perspect Med, 2021, 11(3):a038729. |
[10] | MA Y M, OUYANG J, WEI J Y, et al. Involvement of host non-coding RNAs in the pathogenesis of the influenza virus[J]. Int J Mol Sci, 2016, 18(1):39. |
[11] | WANG J, CEN S. Roles of lncRNAs in influenza virus infection[J]. Emerg Microbes Infect, 2020, 9(1):1407-1414. |
[12] | WINTERLING C, KOCH M, KOEPPEL M, et al. Evidence for a crucial role of a host non-coding RNA in influenza A virus replication[J]. RNA Biol, 2014, 11(1):66-75. |
[13] | JECK W R, SHARPLESS N E. Detecting and characterizing circular RNAs[J]. Nat Biotechnol, 2014, 32(5):453-461. |
[14] | CHEN Y G, KIM M V, CHEN X Q, et al. Sensing self and foreign circular RNAs by intron identity[J]. Mol Cell, 2017, 67(2):228-238.e5. |
[15] | LI X, LIU C X, XUE W, et al. Coordinated circRNA biogenesis and function with NF90/NF110 in viral infection[J]. Mol Cell, 2017, 67(2):214-227.e7. |
[16] | AWAN F M, YANG B B, NAZ A, et al. The emerging role and significance of circular RNAs in viral infections and antiviral immune responses:possible implication as theranostic agents[J]. RNA Biol, 2021, 18(1):1-15. |
[17] | MO Y Y, LIU Y Z, LU A N, et al. Role of circRNAs in viral infection and their significance for diagnosis and treatment (Review)[J]. Int J Mol Med, 2021, 47(5):88. |
[18] | LIU Z Y, GUO Y N, ZHAO L C, et al. Analysis of the circRNAs expression profile in mouse lung with H7N9 influenza A virus infection[J]. Genomics, 2021, 113(1 Pt 2):716-727. |
[19] | TAO P, NING Z Y, HAO X Q, et al. Comparative analysis of whole-transcriptome RNA expression in MDCK cells infected with the H3N2 and H5N1 canine influenza viruses[J]. Front Cell Infect Microbiol, 2019, 9:76. |
[20] | QU Z Y, MENG F, SHI J Z, et al. A novel Intronic circular RNA antagonizes influenza virus by absorbing a microRNA that degrades CREBBP and accelerating IFN-β production[J]. mBio, 2021, 12(4):e0101721. |
[21] | SHI N, ZHANG S, GUO Y D, et al. CircRNA_0050463 promotes influenza A virus replication by sponging miR-33b-5p to regulate EEF1A1[J]. Vet Microbiol, 2021, 254:108995. |
[22] | YU T Q, DING Y N, ZHANG Y N, et al. Circular RNA GATAD2A promotes H1N1 replication through inhibiting autophagy[J]. Vet Microbiol, 2019, 231:238-245. |
[23] | MARTIN M. Cutadapt removes adapter sequences from high-throughput sequencing reads[J]. EMBnet J, 2011, 17(1):3. |
[24] | DOBIN A, DAVIS C A, SCHLESINGER F, et al. STAR: ultrafast universal RNA-seq aligner[J]. Bioinformatics, 2013, 29(1):15-21. |
[25] | JAKOBI T, CZAJA-HASSE L F, REINHARDT R, et al. Profiling and validation of the circular RNA repertoire in adult murine hearts[J]. Genom Proteom Bioinformat, 2016, 14(4):216-223. |
[26] | ROBINSON M D, MCCARTHY D J, SMYTH G K. edgeR: a Bioconductor package for differential expression analysis of digital gene expression data[J]. Bioinformatics, 2010, 26(1):139-140. |
[27] | MR K. Pheatmap:pretty heatmaps[J]. 2015.KOLDE R. Pheatmap: pretty heatmaps[CP/OL]. 2015. [2023-03-01] https://cran.r-project.org/web/packages/pheatmap/index.html. |
[28] | WU T Z, HU E Q, XU S B, et al. clusterProfiler 4. 0: A universal enrichment tool for interpreting omics data[J]. Innovation (Camb), 2021, 2(3):100141. |
[29] | KRISTENSEN L S, ANDERSEN M S, STAGSTED L V W, et al. The biogenesis, biology and characterization of circular RNAs[J]. Nat Rev Genet, 2019, 20(11):675-691. |
[30] | XIA X, TANG X Y, WANG S J. Roles of CircRNAs in autoimmune diseases[J]. Front Immunol, 2019, 10:639. |
[31] | YU X H, LIU H Y, CHANG N, et al. Circular RNAs:New players involved in the regulation of cognition and cognitive diseases[J]. Front Neurosci, 2023, 17:1097878. |
[32] | TAGAWA T, OH D, DREMEL S, et al. A virus-induced circular RNA maintains latent infection of Kaposi’s sarcoma herpesvirus[J]. Proc Natl Acad Sci USA, 2023, 120(6):e2212864120. |
[33] | ZHOU W Y, CAI Z R, LIU J, et al. Circular RNA:metabolism, functions and interactions with proteins[J]. Mol Cancer, 2020, 19(1):172. |
[34] | STRASSER A, DICKMANNS A, LVHRMANN R, et al. Structural basis for m3G-cap-mediated nuclear import of spliceosomal UsnRNPs by snurportin1[J]. EMBO J, 2005, 24(13):2235-2243. |
[35] | SCHMOKER A M, WEINERT J L, MARKWOOD J M, et al. FYN and ABL regulate the interaction networks of the DCBLD receptor family[J]. Mol Cell Proteomics, 2020, 19(10):1586-1601. |
[36] | HU J J, SUN F Y, HANDEL M A. Nuclear localization of EIF4G3 suggests a role for the XY body in translational regulation during spermatogenesis in mice[J]. Biol Reprod, 2018, 98(1):102-114. |
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