Acta Veterinaria et Zootechnica Sinica ›› 2021, Vol. 52 ›› Issue (7): 2013-2024.doi: 10.11843/j.issn.0366-6964.2021.07.023

• BASIC VETERINARY MEDICINE • Previous Articles     Next Articles

Bayesian Inference and Simulation on True Prevalence of Porcine Epidemic Diarrhea Virus in American Swine Population

ZHANG Zhicheng1*, CHEN Meijuan2, AI Jun3   

  1. 1. National African Swine Fever Reference Laboratory, China Animal Health & Epidemiology Center, Qingdao 266032, China;
    2. Agricultural College, Ningxia University, Yingchuan 750000, China;
    3. Kunming Customs Technology Center, Kunming 650228, China
  • Received:2020-11-18 Online:2021-07-23 Published:2021-07-23

Abstract: The coronaviruses of livestock, such as porcine epidemic diarrhea virus-PEDV, have genetic sequences that are highly similar to those of coronaviruses in bats, which can cause intestinal infections in pigs and cause a large number of deaths of piglets, which is extremely harmful to the health of animals. This study is based on the data mining of the epidemiological prevalence of PEDV strains in the United States as a priori information, combined with antibody screening of US swine in 2019 at entry port as the knowledge update, Bayesian statistical inference were employed to estimate the true prevalence of PEDV in US swine populations. The results show that the median true prevalence (median) of PEDV in the US swine population is 0.005 22 (95% CI=0.000 424-0.022 5), and the prevalence distribution of the 95% upper confident limit (UCL) is 3%. The probability density statistical properties of the posterior distribution prevalence are highly right-skewed to infer that the true prevalence of PEDV in the U.S. pig herd is mainly concentrated between in the 2.5% percentile (P2.5%=0.0002) and the median (P50%=0.005 22), but due to the variability and difference among different pig herds in the United States, the PEDV true prevalence distribution value of a random sampling may have a small probability overflowing the distribution greater than 0.03 (P ≤ 2.5%). In addition, in terms of assay selection for port screening, it is recommended that N protein-based ELISA can be used as the primary screening method, and then use S1 recombinant protein ELISA as the re-screening method to improve the port's ability of risk perception, control and identification capabilities to mitigate the entry risk of coronavirus into the country. Bayesian statistical inference and surveillance technology based on prior distribution and optimization of port laboratory testing results can provide scientific evidence-based risk decision technology for blocking the invasion of foreign pathogenic microorganisms to the greatest extent on the basis of existing knowledge and cognition, which can be of great significance to port inspection and quarantine, sampling monitoring and risk decision-making.

Key words: coronaviruses, porcine epidemic diarrhea virus, PEDV, priori information, Bayesian inference, true prevalence, surveillance technology, risk decision

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