Acta Veterinaria et Zootechnica Sinica ›› 2025, Vol. 56 ›› Issue (2): 788-802.doi: 10.11843/j.issn.0366-6964.2025.02.028
• Preventive Veterinary Medicine • Previous Articles Next Articles
YU Zekun1,2(), JIANG Chengyuan2, YUAN Hongxing3, ZHOU Sheng2, DUAN Xiaoxiao4, LI Yan4,*(
), SONG Qinye1,*(
)
Received:
2024-04-07
Online:
2025-02-23
Published:
2025-02-26
Contact:
LI Yan, SONG Qinye
E-mail:zekun_yu@qq.com;liyanqd2008@163.com;songqinye@126.com
CLC Number:
YU Zekun, JIANG Chengyuan, YUAN Hongxing, ZHOU Sheng, DUAN Xiaoxiao, LI Yan, SONG Qinye. Construction and Identification of Infectious Clone of the Avian Metapneumovirus of Subtype B Strain B1[J]. Acta Veterinaria et Zootechnica Sinica, 2025, 56(2): 788-802.
Table 1
The primers of plasmid constraction and fragment length"
引物名称 Primer name | 引物序列(5′→3′) Sequence | 片段长度/bp Size |
FAF | $\underline{{\rm{ACGACTCACTATAGG}}}$GACGAGAAAAAAACGCATTCAAGTCACAATAG | 2 405 |
FAR | TGCCTCAGATTCACCGCTCGAG | |
FBF | $\underline{{\rm{AGGATCAAAGCTCGA}}}$GCGGTGAATC | 5 485 |
FBR | $\underline{{\rm{TATGGTCGGCCTATAA}}}$TGCAAGACCCAATTGC | |
FCF | $\underline{{\rm{TATAGGCCGACCATAC}}}$CTAAAGGATGAC | 3 118 |
FCR | $\underline{{\rm{ATTTGTAATAGATTTGG}}}$TACCTGCTATC | |
FDF | $\underline{{\rm{GGTGAATCTGAGGCA}}}$GTAGTTAACATGATAGCAGGTAC | 2 987 |
FDR | $\underline{{\rm{GATGCCATGCCGACC}}}$CACGGCAAAAAAACCGTATTCAATAC | |
B1-Pme I1F | GGGACAAGTGTTTAAACTGAGTAATTAAAAAATATGGGGCAAGTAAAATGTACCTC | 8 483 |
B1-Pme I1R | $\underline{{\rm{ATTGGCTCTAGCACG}}}$ACTAACT | |
B1-Pme I2F | $\underline{{\rm{CGTGCTAGAGCCAAT}}}$TGTGGAG | 8 515 |
B1-Pme I2R | TACTCAGTTTAAACACTTGTCCCATTTTTTTTATTAAACTACAGAAGAATAGTAGAC | |
B1-EGFPF | $\underline{{\rm{ATGGGACAAGTGTTT}}}$ATGGTGAGCAAGGGCGAGG | 757 |
B1-EGFPR | $\underline{{\rm{ATATTTTTTAATTACTCAGTTT}}}$TTACTTGTACAGCTCGTCCATGCCG | |
EGFP基因检测F | TTCAGCGTGTCCGGCGAG | 735 |
EGFP基因检测R | TCTTGTATCTTCCCGCTGGC | |
LF | $\underline{{\rm{GGCTAGCCTCGAGAATTC}}}$GCCACCATGGACCCATCCAGTGAGC | 6 057 |
LR | $\underline{{\rm{GCGGCCGCCCGGGTCGAC}}}$CTATTTTGTGCTCAGTATGTACCCTGT | |
NPM2.1-NF | $\underline{{\rm{ATAGCGATAAGGATC}}}$TAGTTCATAGCCCATATATGGAGTTCCGC | 2 380 |
NPM2.1-NR | $\underline{{\rm{ATAATCAAGTAGAGG}}}$TTTTACTTGCTTTAAAAAACCTCC | |
NPM2.1-PF | $\underline{{\rm{CCTCTACTTGATTATT}}}$GACTAGTTATTAATAGTAATCAATTACGGGGTCA | 2 149 |
NPM2.1-PR | $\underline{{\rm{CACCATACGCGGATC}}}$GGTGCGGGCCTC |
Fig. 1
Construction diagram of pTH-B1 plasmid A, B, C, D indicate the fragments range to viral cDNA; N, P, M, F, M2, SH, G, L represent viral genes; T7: T7 RNA polymerase transcriptional promoter; HdvRz&T7ter. Hepatitis delta virus ribozyme and T7 RNA polymerase transcriptional terminator; Mlu Ⅰ, Xho Ⅰ, Kpn Ⅰ, Not Ⅰ. The specific restriction enzyme site contained in the plasmid, the number in parentheses is the position of the enzyme restriction site in the pTH-B1 plasmid; . Genetic marker"
Fig. 3
Construction diagram of two auxiliary plasmids and mini-genome plasmid A. Auxiliary plasmid pCI-NPM2.1 (CMV. Human cytomegalovirus RNA transcription promoter; SV40 polyA. RNA transcriptional termination and polyadenylation signal sequence); B. Helper plasmid pCI-L; C. Mini-genome plasmid (Trailer. 5′untranslated regulatory sequence of the genome of strain B1; Leader. 3′untranslated regulatory sequence of the genome of strain B1; GE. Transcriptional termination sequence of L gene; GS. Transcriptional initiation sequence of N gene)"
Table 2
Detection primers and fragment length"
引物名称 Primer name | 引物序列(5′→3′) Sequence | 片段长度/bp Size |
N基因检测F | GCAGACAATGTGGAACGAACTGC | 475 |
N基因检测R | TTAGCTCTGCCTGCACAGACACATG | |
SalⅠ检测F | ACCAGGTAGGAACTTACAATCCTAG | 1 331 |
SalⅠ检测R | AGTAGCTTTATAATCTTGAGCACTC | |
qB1F | AATAGTCCTCAAGCAAGTCCTCAGA | 135 |
qB1R | TGTTGTAATTTGACCTGTTCTACACT | |
qB1-probe | FAM-CTGGTGTTATCAGCCTTAGGCTTGACGCT-BHQ |
Fig. 6
The comparison of different intergenic region of subtype B aMPV strains A. The intergenic region of M-F gene; B. The intergenic region of M2-SH gene; C. The intergenic region of SH-G gene; D. The intergenic region of G-L gene; E. The 5′untranslated region of viral genome; "." shows the same base; "-" shows the missing base; the red boxes show the different nucleic acids"
Fig. 12
Identification of rescued strains A. Detection of N gene (1. B1 strain; 2. rB1 strain; 3. rB1-EGFP strain; M. DL2000 bp DNA marker; 4. Negative control; 5. Positive control); B. Detection of Genetic marker (1. SalⅠ enzyme-digested product of B1 strain; 2. SalⅠ enzyme-digested product of rB1 strain; 3. SalⅠ enzyme-digested product of rB1-EGFP strain; M. DL2000 bp DNA marker); C. Sequencing analysis of rB1 genetic marker"
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