Acta Veterinaria et Zootechnica Sinica ›› 2024, Vol. 55 ›› Issue (9): 3833-3842.doi: 10.11843/j.issn.0366-6964.2024.09.009
• Animal Genetics and Breeding • Previous Articles Next Articles
Jingjing TIAN(), Xiaoqing WANG, Mianyan LI, Hailing WANG, Qitian WU, Lixian WANG, Longchao ZHANG*(), Fuping ZHAO*()
Received:
2024-03-06
Online:
2024-09-23
Published:
2024-09-27
Contact:
Longchao ZHANG, Fuping ZHAO
E-mail:tianjingjing9321@163.com;zhlchias@163.com; zhanglongchao@caas.cn;zhaofuping@caas.cn
CLC Number:
Jingjing TIAN, Xiaoqing WANG, Mianyan LI, Hailing WANG, Qitian WU, Lixian WANG, Longchao ZHANG, Fuping ZHAO. Analysis of the Whole Genome Run of Homozygosity (ROH) and Selection Signal in Beijing Black Pigs[J]. Acta Veterinaria et Zootechnica Sinica, 2024, 55(9): 3833-3842.
Table 1
Basic descriptive statistics for the 5 categories of ROHs"
ROH分类 Type of ROH | 数量 Number | 百分比/% Percentage | 均值/Mb Mean | 总长度/Mb Total length | 长度百分比/% Length percentage |
1~5 Mb | 28 315 | 59.99 | 3.07 | 86 848.9 | 28.68 |
5~10 Mb | 11 869 | 25.15 | 6.88 | 81 660.9 | 26.97 |
10~20 Mb | 4 994 | 10.58 | 13.59 | 67 863.5 | 22.41 |
20~40 Mb | 1 604 | 3.40 | 26.69 | 42 818.2 | 14.14 |
>40 Mb | 419 | 0.89 | 56.40 | 23 630.1 | 7.80 |
Table 2
Location information and the number of genes contained in ROH island"
染色体 Chromosome | 起始位点/bp Start | 终止位点/bp End | SNPs数目 SNPs number | 基因数目 Gene number |
1 | 59 620 943 | 61 060 616 | 24 | 2 |
1 | 61 246 160 | 63 012 075 | 34 | 2 |
1 | 266 123 073 | 266 123 073 | 1 | 1 |
13 | 1 967 845 | 4 228 022 | 69 | 16 |
15 | 25 472 091 | 29 112 719 | 119 | 2 |
5 | 16 390 314 | 17 316 265 | 26 | 8 |
6 | 4 546 603 | 8 502 813 | 112 | 20 |
7 | 69 872 560 | 74 920 040 | 57 | 12 |
8 | 122 505 268 | 122 951 435 | 6 | 0 |
9 | 9 902 154 | 10 035 783 | 1 | 2 |
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