Acta Veterinaria et Zootechnica Sinica ›› 2021, Vol. 52 ›› Issue (8): 2151-2161.doi: 10.11843/j.issn.0366-6964.2021.08.008
• ANIMAL GENETICS AND BREEDING • Previous Articles Next Articles
LI Sen1, DU Yongwang1, WEN Jie1, HUANG Chao2, CHEN Zhiwu2, ZHAO Guiping1, ZHENG Maiqing1*
Received:
2020-12-08
Online:
2021-08-23
Published:
2021-08-21
CLC Number:
LI Sen, DU Yongwang, WEN Jie, HUANG Chao, CHEN Zhiwu, ZHAO Guiping, ZHENG Maiqing. A Study of Genomic Selection for Feed Efficiency Traits in Fast-growing Yellow-feathered Broilers[J]. Acta Veterinaria et Zootechnica Sinica, 2021, 52(8): 2151-2161.
[1] | 宫桂芬.中国肉鸡产业发展现状及展望[J].畜牧产业,2018(8):8-15.GONG G F.Development status and prospect of China's broiler industry[J].Animal Agriculture,2018(8):8-15.(in Chinese) |
[2] | WILLEMS O W,MILLER S P,WOOD B J.Assessment of residual body weight gain and residual intake and body weight gain as feed efficiency traits in the turkey (Meleagris gallopavo)[J].Genet Sel Evol,2013,45(1):26. |
[3] | CLARK C E F,AKTER Y,HUNGERFORD A,et al.The intake pattern and feed preference of layer hens selected for high or low feed conversion ratio[J].PLoS One,2019,14(9):e0222304. |
[4] | BERRY D P,CROWLEY J J.Residual intake and body weight gain:a new measure of efficiency in growing cattle[J].J Anim Sci,2012, 90(1):109-115. |
[5] | MEBRATIE W,MADSEN P,HAWKEN R,et al.Genetic parameters for body weight and different definitions of residual feed intake in broiler chickens[J].Genet Sel Evol,2019,51(1):53. |
[6] | AL-KHUDHAIR A,VANRADEN P M,NULL D J,et al.Marker selection and genomic prediction of economically important traits using imputed high-density genotypes for 5 breeds of dairy cattle[J].J Dairy Sci,2021,104(4):4478-4485. |
[7] | TENG J Y,GAO N,ZHANG H B,et al.Performance of whole genome prediction for growth traits in a crossbred chicken population[J]. Poult Sci,2019,98(5):1968-1975. |
[8] | MOGHADDAR N,KHANSEFID M,VAN DER WERF J H J,et al.Genomic prediction based on selected variants from imputed whole-genome sequence data in Australian sheep populations[J].Genet Sel Evol,2019,51(1):72. |
[9] | WANG C,HABIER D,PEIRIS B L,et al.Accuracy of genomic prediction using an evenly spaced,low-density single nucleotide polymorphism panel in broiler chickens[J].Poult Sci,2013,92(7):1712-1723. |
[10] | SIMEONE R,MISZTAL I,AGUILAR I,et al.Evaluation of a multi-line broiler chicken population using a single-step genomic evaluation procedure[J].J Anim Breed Genet,2012,129(1):3-10. |
[11] | WOLC A,STRICKER C,ARANGO J,et al.Breeding value prediction for production traits in layer chickens using pedigree or genomic relationships in a reduced animal model[J].Genet Sel Evol,2011,43(1):5. |
[12] | ZHANG Z,XU Z Q,LUO Y Y,et al.Whole genomic prediction of growth and carcass traits in a Chinese quality chicken population[J]. J Anim Sci,2017,95(1):72-80. |
[13] | LIU T F,LUO C L,WANG J,et al.Assessment of the genomic prediction accuracy for feed efficiency traits in meat-type chickens[J].PLoS One,2017,12(3):e0173620. |
[14] | LIU T F,QU H,LUO C L,et al.Accuracy of genomic prediction for growth and carcass traits in Chinese triple-yellow chickens[J]. BMC Genet,2014,15:110. |
[15] | WU X,LUND M S,SUN D,et al.Impact of relationships between test and training animals and among training animals on reliability of genomic prediction[J].J Anim Breed Genet,2015,132(5):366-375. |
[16] | BRUNES L C,BALDI F,LOPES F B,et al.Genomic prediction ability for feed efficiency traits using different models and pseudo-phenotypes under several validation strategies in Nelore cattle[J].Animal,2021,15(2):100085. |
[17] | VAN DEN BERG I,MACLEOD I M,REICH C M,et al.Optimizing genomic prediction for Australian Red dairy cattle[J].J Dairy Sci,2020,103(7):6276-6298. |
[18] | MANZANILLA-PECH C I V,VEERKAMP R F,DE HAAS Y,et al.Accuracies of breeding values for dry matter intake using nongenotyped animals and predictor traits in different lactations[J].J Dairy Sci,2017,100(11):9103-9114. |
[19] | ALEMU S W,CALUS M P L,MUIR W M,et al.Genomic prediction of survival time in a population of brown laying hens showing cannibalistic behavior[J].Genet Sel Evol,2016,48(1):68. |
[20] | 彭潇,尹立林,梅全顺,等.猪主要经济性状的基因组选择研究[J].畜牧兽医学报,2019,50(2):439-445.PENG X,YIN L L,MEI Q S,et al.A study of genome selection based on the porcine major economic traits[J].Acta Veterinaria et Zootechnica Sinica,2019,50(2):439-445.(in Chinese) |
[21] | LIU R R,XING S Y,WANG J,et al.A new chicken 55K SNP genotyping array[J].BMC Genomics,2019,20(1):410. |
[22] | PURCELL S,NEALE B,TODD-BROWN K,et al.PLINK:a tool set for whole-genome association and population-based linkage analyses[J].Am J Hum Genet,2007,81(3):559-575. |
[23] | BROWNING S R,BROWNING B L.Rapid and accurate haplotype phasing and missing-data inference for whole-genome association studies by use of localized haplotype clustering[J].Am J Hum Genet,2007,81(5):1084-1097. |
[24] | VANRADEN P M.Efficient methods to compute genomic predictions[J].J Dairy Sci,2008,91(11):4414-4423. |
[25] | MISZTAL I,AGUILAR I,LEGARRA A,et al.Choice of parameters for single-step genomic evaluation for type[J].J Dairy Sci,2010,93:533. |
[26] | GILMOUR A R,THOMPSON R,CULLIS B R.Average information REML:an efficient algorithm for variance parameter estimation in linear mixed models[J].Biometrics,1995,51(4):1440-1450. |
[27] | DE VERDAL H,NARCY A,BASTIANELLI D,et al.Improving the efficiency of feed utilization in poultry by selection.1.Genetic parameters of anatomy of the gastro-intestinal tract and digestive efficiency[J].BMC Genet,2011,12:59. |
[28] | CHU T T,MADSEN P,NORBERG E,et al.Genetic analysis on body weight at different ages in broiler chicken raised in commercial environment[J].J Anim Breed Genet,2020,137(2):245-259. |
[29] | XU Z Q,JI C L,ZHANG Y,et al.Combination analysis of genome-wide association and transcriptome sequencing of residual feed intake in quality chickens[J].BMC Genomics,2016,17:594. |
[30] | YI Z H,LI X,LUO W,et al.Feed conversion ratio,residual feed intake and cholecystokinin type A receptor gene polymorphisms are associated with feed intake and average daily gain in a Chinese local chicken population[J].J Anim Sci Biotechno,2018,9:50. |
[31] | BÉRÉNOS C,ELLIS P A,PILKINGTON J G,et al.Estimating quantitative genetic parameters in wild populations:a comparison of pedigree and genomic approaches[J].Mol Ecol,2014,23(14):3434-3451. |
[32] | BALOCHE G,LEGARRA A,SALLÉ G,et al.Assessment of accuracy of genomic prediction for French Lacaune dairy sheep[J].J Dairy Sci,2014,97(2):1107-1116. |
[33] | WANG L,JANSS L L,MADSEN P,et al.Effect of genomic selection and genotyping strategy on estimation of variance components in animal models using different relationship matrices[J].Genet Sel Evol,2020,52(1):31. |
[34] | LOBERG A,DÜRR J W,FIKSE W F,et al.Estimates of genetic variance and variance of predicted genetic merits using pedigree or genomic relationship matrices in six Brown Swiss cattle populations for different traits[J].J Anim Breed Genet, 2015, 132(5):376-385. |
[35] | ARCHER J A,RICHARDSON E C,HERD R M,et al.Potential for selection to improve efficiency of feed use in beef cattle:a review[J].Aust J Agr Res,1999,50(2):147-161. |
[36] | AGGREY S E,KARNUAH A B,SEBASTIAN B,et al.Genetic properties of feed efficiency parameters in meat-type chickens[J].Genet Sel Evol,2010,42(1):25. |
[37] | CAI W,CASEY D S,DEKKERS J C M.Selection response and genetic parameters for residual feed intake in Yorkshire swine[J].J Anim Sci,2008,86(2):287-298. |
[38] | DE FIGUEIREDO D M,MERCADANTE M E Z,PIRES A V,et al.The phenotypic relationship between residual intake and gain and other feed efficiency traits in Nellore cattle[J].Trop Anim Health Pro,2019,51(2):449-456. |
[39] | DE ASSIS LAGE C F,COELHO S G,NETO H D C D,et al.Relationship between feed efficiency indexes and performance,body measurements,digestibility,energy partitioning,and nitrogen partitioning in pre-weaning dairy heifers[J].PLoS One,2019,14(10):e0223368. |
[40] | LEGARRA A,AGUILAR I,MISZTAL I.A relationship matrix including full pedigree and genomic information[J].J Dairy Sci,2009,92(9):4656-4663. |
[41] | ONOGI A,OGINO A,KOMATSU T,et al.Genomic prediction in Japanese Black cattle:application of a single-step approach to beef cattle[J].J Anim Sci,2014,92(5):1931-1938. |
[42] | LI X J,WANG S,HUANG J,et al.Improving the accuracy of genomic prediction in Chinese Holstein cattle by using one-step blending[J].Genet Sel Evol,2014,46(1):66. |
[43] | GUO X,CHRISTENSEN O F,OSTERSEN T,et al.Improving genetic evaluation of litter size and piglet mortality for both genotyped and nongenotyped individuals using a single-step method[J].J Anim Sci,2015,93(2):503-512. |
[44] | GAO H D,CHRISTENSEN O F,MADSEN P,et al.Comparison on genomic predictions using three GBLUP methods and two single-step blending methods in the Nordic Holstein population[J].Genet Sel Evol,2012,44(1):8. |
[45] | LIU Z T,SEEFRIED F R,REINHARDT F,et al.Impacts of both reference population size and inclusion of a residual polygenic effect on the accuracy of genomic prediction[J].Genet Sel Evol,2011,43(1):19. |
[46] | MOGHADDAR N,VAN DER WERF J H J.Genomic estimation of additive and dominance effects and impact of accounting for dominance on accuracy of genomic evaluation in sheep populations[J].J Anim Breed Genet,2017,134(6):453-462. |
[47] | BAI H,SUN Y,LIU N,et al.Genome-wide detection of CNVs associated with beak deformity in chickens using high-density 600K SNP arrays[J].Anim Genet,2018,49(3):226-236. |
[48] | ALVES A A C,DA COSTA R M,BRESOLIN T,et al.Genome-wide prediction for complex traits under the presence of dominance effects in simulated populations using GBLUP and machine learning methods[J].J Anim Sci,2020,98(6):skaa179. |
[1] | DUAN Yixin, ZHANG Linyun, ZHAO Yongju. The Evaluated Methods and Influencing Factors of SNP Heritability and Its Application in Farmer Animal Breeding [J]. Acta Veterinaria et Zootechnica Sinica, 2024, 55(5): 1854-1865. |
[2] | LIU Jiahui, WU Kaikai, WANG Lei, ZHANG Kang, HAN Songwei, CHEN Fubin, XU Guowei, GUO Zhiting, GU Xueyan, ZHANG Jingyan, LI Jianxi. Protective Effects of Astragalus Polysaccharides, Saponins and Probiotic Compounds on Intestinal Tract of Broilers Infected with E.coli [J]. Acta Veterinaria et Zootechnica Sinica, 2024, 55(5): 2241-2252. |
[3] | XIA Shuwen, CHEN Kunlin, SHEN Yangyang, AN Zhenjiang, ZHAO Fang, DING Qiang, ZHONG Jifeng, LIN Zhiping, WANG Huili. The Estimation of Genetic Parameters for Longevity Traits of Holstein Cows in Jiangsu Region [J]. Acta Veterinaria et Zootechnica Sinica, 2024, 55(3): 1030-1039. |
[4] | LIANG Canxin, ZHENG Xiaoxue, SHU Xueli, ZHOU Wanyi, LIAO Ming, CAO Weisheng. Isolation of ALV-K Associated with Endothelial Hemangioma in Chicken and Analysis of gp85 Gene Evolution [J]. Acta Veterinaria et Zootechnica Sinica, 2024, 55(3): 1127-1136. |
[5] | ZHENG Lin, WEI Bingdong, HUA Feng, CHEN Long, DING Yuan. Therapeutic Effect of Lytic Phage on Salmonella enteritidis Infection in Broilers [J]. Acta Veterinaria et Zootechnica Sinica, 2024, 55(3): 1314-1327. |
[6] | ZHONG Xin, ZHANG Hui, ZHANG Chong, LIU Xiaohong. Research Progress on Genetic Breeding of Reproductive Performance in Sows [J]. Acta Veterinaria et Zootechnica Sinica, 2024, 55(2): 438-450. |
[7] | SONG Mingqiang, XIE Jingjing, OU Juan, WANG Yuming, HOU Jia, TAN Gaoming, TIAN Kai, ZHU Yun, SA Renna, ZHAO Feng. Comparative Study on the Accuracy of Dietary Metabolizable Energy Influenced by Methods of Acid Insoluble Ash in Broilers [J]. Acta Veterinaria et Zootechnica Sinica, 2024, 55(2): 619-628. |
[8] | WANG Dong, LIU Kexin, HE Yanjun, DENG Shouxiang, LIU Yun, MA Weiming. Effects of Dietary Sodium Humate Supplementation on Liver Tissue Inflammation and Antioxidant Capacity of Salmonella Typhimurium-Infected Broilers [J]. Acta Veterinaria et Zootechnica Sinica, 2024, 55(2): 629-639. |
[9] | QIU Wenyue, SU Yiman, YE Jiali, ZHANG Xinting, PANG Xiaoyue, WANG Rongmei, XIE Zimao, ZHANG Hui, TANG Zhaoxin, SU Rongsheng. Study on Asiatic Acid Alleviates LPS-induced Acute Kidney Injury by Regulating Apoptosis and Autophagy of Broilers [J]. Acta Veterinaria et Zootechnica Sinica, 2024, 55(2): 809-821. |
[10] | TANG Xinxin, ZHENG Jumei, LUO Na, YING Fan, ZHU Dan, LI Sen, LIU Dawei, AN Bingxing, WEN Jie, ZHAO Guiping, LI Hegang. Genetic Mechanism of Broiler Leg Disease Based on Genome-Wide Association Analysis [J]. Acta Veterinaria et Zootechnica Sinica, 2024, 55(1): 99-109. |
[11] | YUAN Heling, FANG Ci, HUANG Jinhu, WANG Xiaoming, XIAO Wenjun, LIU Ruiting, SHI Rongmei, WANG Liping. Effects of Allicin on mRNA Expression of CYP1A2 and Its Enzyme Kinetics in Broilers Liver Tissue [J]. Acta Veterinaria et Zootechnica Sinica, 2023, 54(9): 3905-3915. |
[12] | WANG Wannian, CHEN Sijia, GAO Jinrong, WEN Zhonghao, YUAN Mengjiao, ZHANG Hongzhi, PANG Zhixu, QIAO Liying, LIU Wenzhong. Simulation Study on Genomic Selection of Sex-limited Traits Using Multilayer Perceptron in Sheep [J]. Acta Veterinaria et Zootechnica Sinica, 2023, 54(7): 2824-2835. |
[13] | WANG Zixuan, WANG Qiao, ZHANG Jin, Astrid Lissette Barreto Sánchez, ZHENG Maiqing, LI Qinghe, CUI Huanxian, AN Bingxing, ZHAO Guiping, WEN Jie, LI Hegang. Transcriptome Based Screening of Functional Genes Related to Heat Stress Resistance in Beijing You Chickens and Guangming Broilers [J]. Acta Veterinaria et Zootechnica Sinica, 2023, 54(5): 1905-1914. |
[14] | BAI Lu, WANG Mengjie, MA Xiaochun, HE Zhengxiao, KONG Fuli, LIU Dawei, YING Fan, ZHU Dan, ZHAO Guiping, WEN Jie, LIU Ranran. Study of the Alteration of Wooden Breast Histological and Molecular Regulatory Pathways in Chickens [J]. Acta Veterinaria et Zootechnica Sinica, 2023, 54(5): 1915-1926. |
[15] | YAN Weidong, WANG Ping, JIANG Mingjun, ZHAO Jingpeng, WANG Xiaojuan, LIN Hai, JIAO Hongchao. Effects of Supplementing Phytase to Cu Decrement Diet on Production Performance and Cu, Zn Excretion of Broilers [J]. Acta Veterinaria et Zootechnica Sinica, 2023, 54(4): 1535-1544. |
Viewed | ||||||
Full text |
|
|||||
Abstract |
|
|||||