肉鸽肠道微生物菌群差异分析和抗生素耐药基因预测

doi:10.11843/j.issn.0366-6964.2023.12.037

Abstract

Abstract: In this study, metagenomics was used to explore the fecal microbiota differences between the young pigeons (RP) and older pigeons (LP). The results showed that Firmicutes, Proteobacteria and Actinobacteria were the dominant bacterias. The contents of Bifidobacterium, Corynebacteriun, Psychrobacter and Streptococcus in RP group were significantly higher than those in LP group, while the relative abundance of Staphyloccus, Brachybacterium, Kurthia and Escherichia in LP group were significantly higher than those in RP group. Further LEfSe analysis showed that the differentially expressed genes in the two groups were enriched in 5 KEGG pathways. Antibiotic resistance genes (ARGs) analyzation showed that a total of 198 ARG,were identified. And the prevalence rate of multi-drug ARGs was more than 40%, which indicated that the antibiotic resistance problem in pigeon is seriously. The current study provided scientific datas for further researches on gut microflora and healthy breeding, and mechanism of antibiotic resistance mechanism.

Key words: pigeon, metagenomics, gut microbiota, antibiotic resistance gene

CLC Number:

S836

TAO Jie, LI Benqiang, CHENG Jinghua, SHI Ying, LIU Peihong, LIU Huili. Differential Analysis and the Antibiotic Resistance Genes Prediction of Gut Microbiota in Pigeon[J]. Acta Veterinaria et Zootechnica Sinica, 2023, 54(12): 5293-5300.

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Differential Analysis and the Antibiotic Resistance Genes Prediction of Gut Microbiota in Pigeon

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