ACTA VETERINARIA ET ZOOTECHNICA SINICA ›› 2013, Vol. 44 ›› Issue (10): 1509-1515.doi: 10.11843/j.issn.0366-6964.2013.10.001
ZHU Xiao-pan, MIAO Xiang-yang*
Received:
2012-12-18
Online:
2013-10-23
Published:
2013-10-23
CLC Number:
ZHU Xiao-pan, MIAO Xiang-yang. Long Non-coding RNAs and Its Functions[J]. ACTA VETERINARIA ET ZOOTECHNICA SINICA, 2013, 44(10): 1509-1515.
[1]MATTICK J S. The genetic signatures of noncoding RNAs[J]. PLoS Genet, 2009, 5(4): e1000459. [2]WAN L B, BARTOLOMEI M S. Regulation of imprinting in clusters: noncoding RNAs versus insulators[J]. Adv Genet, 2008, 61: 207-223. [3]BIRNEY E, STAMATOYANNOPOULOS J A, DUTTA A, et al. Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project[J]. Nature, 2007, 447(7146): 799-816. [4]CHENG J, KAPRANOV P, DRENKOW J, et al. Transcriptional maps of 10 human chromosomes at 5-nucleotide resolution[J]. Science, 2005, 308(5725): 1149-1154. [5]KAPRANOV P, CHENG J, DIKE S, et al. RNA maps reveal new RNA classes and a possible function for pervasive transcription[J]. Science, 2007, 316(5830): 1484-1488. [6]GUTTMAN M, AMIT I, GARBER M, et al. Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals[J]. Nature, 2009, 458(7235): 223-227. [7]CARNINCI P. Non-coding RNA transcription: turning on neighbours[J]. Nat Cell Biol, 2008, 10(9): 1023-1024. [8]PEREZ D S, HOAGE T R, PRITCHETT J R, et al. Long, abundantly expressed non-coding transcripts are altered in cancer[J]. Hum Mol Genet, 2008, 17(5): 642-655. [9]LOURO R, SMIRNOVA A S, VERJOVSKI-ALMEIDA S. Long intronic noncoding RNA transcription: expression noise or expression choice? [J]. Genomics, 2009, 93(4): 291-298. [10]PREKER P, NIELSEN J, KAMMLER S, et al. RNA exosome depletion reveals transcription upstream of active human promoters[J]. Science, 2008, 322(5909): 1851-1854. [11]KIM TK, HEMBERG M, GRAY J M, et al. Widespread transcription at neuronal activity-regulated enhancers[J]. Nature, 2010, 465(7295): 182-187. [12]PONJAVIC J, OLIVER P L, LUNTER G, et al. Genomic and transcriptional co-localization of protein-coding and long non-coding RNA pairs in the developing brain[J]. PLoS Genet, 2009, 5(8): e1000617. [13]CHODROFF R A, GOODSTADT L, SIREY T M, et al. Long noncoding RNA genes: conservation of sequence and brain expression among diverse amniotes[J]. Genome Biol, 2010, 11(7): R72. [14]RINN J L, KERTESZ M, WANG J K, et al. Functional demarcation of active and silent chromatin domains in human HOX loci by noncoding RNAs[J]. Cell, 2007, 129(7): 1311-1323. [15]YU W, GIUS D, ONYANGO P, et al. Epigenetic silencing of tumour suppressor gene p15 by its antisense RNA[J]. Nature, 2008, 451(7175): 202-206. [16]ZHAO J, SUN B K, ERWIN J A, et al. Polycomb proteins targeted by a short repeat RNA to the mouse X chromosome[J]. Science, 2008, 322(5902): 750-756. [17]NAGANO T, MITCHELL J A, SANZ L A, et al. The Air noncoding RNA epigenetically silences transcription by targeting G9a to chromatin[J]. Science, 2008, 322(5908): 1717-1720. [18]WANG X, ARAI S, SONG X, et al. Induced ncRNAs allosterically modify RNA-binding proteins in cis to inhibit transcription[J]. Nature, 2008, 454(7200): 126-130. [19]HOGAN P G, CHEN L, NARDONE J, et al. Transcriptional regulation by calcium, calcineurin, and NFAT[J]. Genes Dev, 2003, 17(18): 2205-2232. [20]HUARTE M, GUTTMAN M, FELDSER D, et al. A large intergenic noncoding RNA induced by p53 mediates global gene repression in the p53 response[J]. Cell, 2010, 142(3): 409-419. [21]DE SANTA F, BAROZZI I, MIETTON F, et al. A large fraction of extragenic RNA pol II transcription sites overlap enhancers[J]. PLoS Biol, 2010, 8(5): e1000384. [22]YU W, GIUS D, ONYANGO P, et al. Epigenetic silencing of tumour suppressor gene p15 by its antisense RNA[J]. Nature, 2008, 451(7175): 202-206. [23]HINDORFF LA J H, MANOLIO T A. A catalog of published genome-wide association studies. National Human Genome Research Institute, 2008: http://www.genome.gov/ gwastudies. [24]TUFARELLI C, STANLEY J A, GARRICK D, et al. Transcription of antisense RNA leading to gene silencing and methylation as a novel cause of human genetic disease[J]. Nat Genet, 2003, 34(2): 157-165. [25]SHIRASAWA S, HARADA H, FURUGAKI K, et al. SNPs in the promoter of a B cell-specific antisense transcript, SAS-ZFAT, determine susceptibility to autoimmune thyroid disease[J]. Hum Mol Genet, 2004, 13(19): 2221-2231. [26]PONTING C P, OLIVER P L, REIK W. Evolution and functions of long noncoding RNAs[J]. Cell, 2009, 136(4): 629-641. [27]CHEN L P, GE Y M, ZHU X Y. Artificial synthesis of interspecific chimeras between tuber mustard (Brassica juncea) and cabbage (Brassica oleracea) and cytological analysis[J]. Plant Cell Rep, 2006, 25(9): 907-913. [28]WANG Y, CHENG Q, ZHU X Y, et al. Studies on reproductive characteristics of an interspecific chimera between Brassica juncea and Brassica oleracea[J]. Plant Cell Tissue Organ Culture (PCTOC), 2010, 104(2): 209-215. [29]FAIZE M, FAIZE L, BURGOS L. Using quantitative real-time PCR to detect chimeras in transgenic tobacco and apricot and to monitor their dissociation[J]. BMC Biotechnol, 2010, 10: 53. [30]TAM O H, ARAVIN A A, STEIN P, et al. Pseudogene-derived small interfering RNAs regulate gene expression in mouse oocytes[J]. Nature, 2008, 453(7194): 534-538. [31]TSANG W P, WONG T W, CHEUNG A H, et al. Induction of drug resistance and transformation in human cancer cells by the noncoding RNA CUDR[J]. RNA, 2007, 13(6): 890-898. [32]TRIPATHI V, ELLIS J D, SHEN Z, et al. The nuclear-retained noncoding RNA MALAT1 regulates alternative splicing by modulating SR splicing factor phosphorylation[J]. Mol Cell, 2010, 39(6): 925-938. [33]TING A H, SCHUEBEL K E, HERMAN J G, et al. Short double-stranded RNA induces transcriptional gene silencing in human cancer cells in the absence of DNA methylation[J]. Nat Genet, 2005, 37(8): 906-910. [34]EDWARDS C A, FERGUSON-SMITH A C. Mechanisms regulating imprinted genes in clusters[J]. Curr Opin Cell Biol, 2007, 19(3): 281-289. [35]SCHOENFELDER S, SMITS G, FRASER P, et al. Non-coding transcripts in the H19 imprinting control region mediate gene silencing in transgenic Drosophila[J]. EMBO Rep, 2007, 8(11): 1068-1073. [36]REGHA K, LATOS P A, SPAHN L. The imprinted mouse Igf2r/Air cluster--a model maternal imprinting system[J]. Cytogenet Genome Res, 2006, 113(1-4): 165-177. [37]NEIL H, MALABAT C, D'AUBENTON-CARAFA Y, et al. Widespread bidirectional promoters are the major source of cryptic transcripts in yeast[J]. Nature, 2009, 457(7232): 1038-1042. [38]WILUSZ J E, FREIER S M, SPECTOR D L. 3′ end processing of a long nuclear-retained noncoding RNA yields a tRNA-like cytoplasmic RNA[J]. Cell, 2008, 135(5): 919-932. [39]XU Z, WEI W, GAGNEUR J, et al. Bidirectional promoters generate pervasive transcription in yeast[J]. Nature, 2009, 457(7232): 1033-1037. [40]LAMOND A I, SPECTOR D L. Nuclear speckles: a model for nuclear organelles[J]. Nat Rev Mol Cell Biol, 2003, 4(8): 605-612. [41]LIN R, MAEDA S, LIU C, et al. A large noncoding RNA is a marker for murine hepatocellular carcinomas and a spectrum of human carcinomas[J]. Oncogene, 2007, 26(6): 851-858. [42]MATOUK I J, ABBASI I, HOCHBERG A, et al. Highly upregulated in liver cancer noncoding RNA is overexpressed in hepatic colorectal metastasis[J]. Eur J Gastroenterol Hepatol, 2009, 21(6): 688-692. |
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