[1] |
MEUWISSEN T H E, HAYES B J, GODDARD M E.Prediction of total genetic value using genome-wide dense marker maps[J].Genetics, 2001, 157(4):1819-1829.
|
[2] |
MEUWISSEN T, HAYES B, GODDARD M.Accelerating improvement of livestock with genomic selection[J].Annu Rev Anim Biosci, 2013, 1:221-237.
|
[3] |
TESSEMA B B, LIU H M, SØRENSEN A C, et al.Strategies using genomic selection to increase genetic gain in breeding programs for wheat[J].Front Genet, 2020, 11:578123.
|
[4] |
SAMORō A B, BUTTAZZONI L, GALLO M, et al.Genomic selection in a pig population including information from slaughtered full sibs of boars within a sib-testing program[J].Animal, 2015, 9(5):750-759.
|
[5] |
JANNINK J L.Dynamics of long-term genomic selection[J].Genet Sel Evol, 2010, 42(1):35.
|
[6] |
AKDEMIR D, SÁNCHEZ J I.Efficient breeding by genomic mating[J].Front Genet, 2016, 7:210.
|
[7] |
WRAY N R, GODDARD M E.Increasing long-term response to selection[J].Genet Sel Evol, 1994, 26(5):431-451.
|
[8] |
MEUWISSEN T H E, SONESSON A K.Maximizing the response of selection with a predefined rate of inbreeding:overlapping generations[J].J Anim Sci, 1998, 76(10):2575-2583.
|
[9] |
MEUWISSEN T H E.Maximizing the response of selection with a predefined rate of inbreeding[J].J Anim Sci, 1997, 75(4):934-940.
|
[10] |
SÁNCHEZ-MOLANO E, PONG-WONG R, BANOS G.Genomic-based optimum contribution in conservation and genetic improvement programs with antagonistic fitness and productivity traits[J].Front Genet, 2016, 7:25.
|
[11] |
HOWARD D M, PONG-WONG R, KNAP P W, et al.Selective advantage of implementing optimal contributions selection and timescales for the convergence of long-term genetic contributions[J].Genet Sel Evol, 2018, 50(1):24.
|
[12] |
CLARK S A, KINGHORN B P, HICKEY J M, et al.The effect of genomic information on optimal contribution selection in livestock breeding programs[J].Genet Sel Evol, 2013, 45(1):44.
|
[13] |
HAMILTON M G.Optimal contribution selection in highly fecund species with overlapping generations[J].J Hered, 2020, 111(7):646-651.
|
[14] |
OLSEN H F, MEUWISSEN T, KLEMETSDAL G.Optimal contribution selection applied to the Norwegian and the North-Swedish cold-blooded trotter-a feasibility study[J].J Anim Breed Genet, 2013, 130(3):170-177.
|
[15] |
PONG-WONG R, WOOLLIAMS J A.Optimisation of contribution of candidate parents to maximise genetic gain and restricting inbreeding using semidefinite programming (Open Access publication)[J].Genet Sel Evol, 2007, 39(1):3.
|
[16] |
AHLINDER J, MULLIN T J, YAMASHITA M.Using semidefinite programming to optimize unequal deployment of genotypes to a clonal seed orchard[J].Tree Genet Genomes, 2014, 10(1):27-34.
|
[17] |
WOOLLIAMS J A, BERG P, DAGNACHEW B S, et al.Genetic contributions and their optimization[J].J Anim Breed Genet, 2015, 132(2):89-99.
|
[18] |
SØRENSEN A C, BERG P, WOOLLIAMS J A.The advantage of factorial mating under selection is uncovered by deterministically predicted rates of inbreeding[J].Genet Sel Evol, 2005, 37(1):57.
|
[19] |
LIU H, HENRYON M, SØRENSEN A C.Mating strategies with genomic information reduce rates of inbreeding in animal breeding schemes without compromising genetic gain[J].Animal, 2017, 11(4):547-555.
|
[20] |
KINGHORN B P, SHEPHERD R K.Mate selection for the tactical implementation of breeding programs[J].Assoc Adv Anim Breed Genet, 1999, 13:130-133.
|
[21] |
KINGHORN B P.Mate selection by groups[J].J Dairy Sci, 1998, 81(2):55-63.
|
[22] |
KINGHORN B P.An algorithm for efficient constrained mate selection[J].Genet Sel Evol, 2011, 43(1):4.
|
[23] |
MOEINIZADE S, HU G P, WANG L Z, et al.Optimizing selection and mating in genomic selection with a look-ahead approach:An operations research framework[J].G3 (Bethesda), 2019, 9(7):2123-2133.
|
[24] |
何 俊, LOPES F B, 吴晓林.动物基因组选配方法与应用[J].遗传, 2019, 41(6):486-493.HE J, LOPES F B, WU X L.Methods and applications of animal genomic mating[J].Hereditas (Beijing), 2019, 41(6):486-493.(in Chinese)
|
[25] |
高振东, 何 俊.基因组选配:基因组时代的高效育种[J].黑龙江畜牧兽医, 2019(24):61-64, 175.GAO Z D, HE J.Genome matching:Efficient breeding in the genome era[J].Heilongjiang Animal Science and Veterinary Medicine, 2019(24):61-64, 175.(in Chinese)
|
[26] |
AKDEMIR D, BEAVIS W, FRITSCHE-NETO R, et al.Multi-objective optimized genomic breeding strategies for sustainable food improvement[J].Heredity (Edinb), 2019, 122(5):672-683.
|
[27] |
SARGOLZAEI M, SCHENKEL F S.QMSim:A large-scale genome simulator for livestock[J].Bioinformatics, 2009, 25(5):680-681.
|
[28] |
PÉREZ P, DE LOS CAMPOS G.Genome-wide regression and prediction with the BGLR statistical package[J]. Genetics, 2014, 198(2):483-495.
|
[29] |
AKDEMIR D, RIO S, SÁNCHEZ J I Y.TrainSel:an R package for selection of training populations[J].Front Genet, 2021, 12:655287.
|
[30] |
VANRADEN P M.Efficient methods to compute genomic predictions[J].J Dairy Sci, 2008, 91(11):4414-4423.
|
[31] |
ENDELMAN J B.Ridge regression and other kernels for genomic selection with R package rrBLUP[J].Plant Genome, 2011, 4(3):250-255.
|
[32] |
张 勤.动物遗传育种中的计算方法[M].北京:科学出版社, 2007.ZHANG Q.The calculation method in animal genetic breeding[M].Beijing:Science Press, 2007.(in Chinese)
|
[33] |
HALDANE J B S.The combination of linkage values, and the calculation of distances between the loci of linked factors[J].J Genet, 1919, 8:299-309.
|
[34] |
ZHAO F P, ZHANG Q.Stimulation study of gene pyramiding in animals by marker-assisted selection[J].J Integr Agric, 2012, 11(11):1871-1876.
|
[35] |
WRIGHT S.Coefficients of inbreeding and relationship[J].Am Nat, 1922, 56(645):330-338.
|
[36] |
YANG J, LEE S H, GODDARD M E, et al.GCTA:a tool for genome-wide complex trait analysis[J].Am J Hum Genet, 2011, 88(1):76-82.
|
[37] |
NIREA K G, SONESSON A K, WOOLLIAMS J A, et al.Effect of non-random mating on genomic and BLUP selection schemes[J].Genet Sel Evol, 2012, 44(1):11.
|
[38] |
SOLÉ M, GORI A S, FAUX P, et al.Age-based partitioning of individual genomic inbreeding levels in Belgian Blue cattle[J].Genet Sel Evol, 2017, 49(1):92.
|
[39] |
VILLANUEVA B, FERNÁNDEZ A, SAURA M, et al.The value of genomic relationship matrices to estimate levels of inbreeding[J].Genet Sel Evol, 2021, 53(1):42.
|
[40] |
ZHANG Q Q, CALUS M P L, GULDBRANDTSEN B, et al.Estimation of inbreeding using pedigree, 50k SNP chip genotypes and full sequence data in three cattle breeds[J].BMC Genet, 2015, 16:88.
|