Acta Veterinaria et Zootechnica Sinica ›› 2025, Vol. 56 ›› Issue (6): 2765-2777.doi: 10.11843/j.issn.0366-6964.2025.06.021
• Animal Biotechnology and Reproduction • Previous Articles Next Articles
GU Bo1(), WANG Anqi2, YU Xinmiao1, GUO Juntong1, YANG Yi1, DENG Yijie1, JIANG Huaizhi2,*(
)
Received:
2024-11-25
Online:
2025-06-23
Published:
2025-06-25
Contact:
JIANG Huaizhi
E-mail:494024036@qq.com;jianghz6806@126.com
CLC Number:
GU Bo, WANG Anqi, YU Xinmiao, GUO Juntong, YANG Yi, DENG Yijie, JIANG Huaizhi. Construction of Ovarian ceRNA Networks and Screening of Key miRNA in Two Different Breeds of Sheep Based on Whole Transcription Sequencing[J]. Acta Veterinaria et Zootechnica Sinica, 2025, 56(6): 2765-2777.
Table 1
qRT-PCR primers sequence information"
目的基因 Gene name | 引物序列(5′→3′) Sequence information | 长度/bp Length | 退火温度/℃ Annealing temperature |
β-actin | F: GATCTGGCACCACACCTTCTA | 115 | 60 |
R: GATCTGGGTCATCTTCTCACG | |||
MSTRG.7755 | F: GCGTTGCTCTGTTCTTTATCTCCTG | 144 | 60 |
R: ACCTGTGCTGTCTGAGTCTTGTG | |||
MSTRG.25228 | F: CCTGATCTTGTCCATCGTCCTATCC | 123 | 60 |
R: GGGAACTGACCAAGGATGATAAGGG | |||
MSTRG.28959 | F: TGCTAAGCCTATGCCACTAGATGC | 128 | 60 |
R: CTCAAAGTCACCAGTTTCCCAAAGG | |||
circRNA4099 | F: TGGAGCCTGTAATAACATGTGAC | 259 | 60 |
R: AGTTCCGCTGTGTTTGCATC | |||
circRNA2195 | F: GGCTGGAGGTTTAAGAAGCG | 125 | 60 |
R: TTGAGGAAGGCAGACAGGTC | |||
circRNA15689 | F: GTGAGCAAATTGTGGAAGTTGGA | 102 | 60 |
R: GGCTTCAAATCTCATGCCCG | |||
CXCR1 | F: GCTGACCTGCTCTTCGCCATG | 160 | 60 |
R: GGTAGCGGTCCATGCTGATGC | |||
POLR2I | F: AGTGGCAGGACTGGAGTTCGG | 145 | 60 |
R: GGTCTTCGGTTCGCGGCAAC | |||
RPS20 | F: CCAGCCGCAACGTGAAGTCTC | 81 | 60 |
R: GCCGACCTCGCTCAGAACAAG | |||
oar-miR-433-3p | F: AACGGCATCATGATGGGCTCC | 65 | 60 |
R: ATCCAGTGCAGGGTCCGAGG | |||
oar-miR-200c | F: AAGCGCCTTAATACTGCCGGG | 65 | 60 |
R: ATCCAGTGCAGGGTCCGAGG | |||
oar-mir-221-p5 | F: CCTGCTGGACCTGGCATACAAT | 65 | 60 |
R: ATCCAGTGCAGGGTCCGAGG | |||
U6 | F: ATCCAGTGCAGGGTCCGAGG | 65 | 60 |
R: TGAAGCGTGCTCGCTTCGGC |
Table 2
lncRNA and circRNA sequencing data production quality"
样本 Sample | 原始数据 Raw data | 有效数据 Valid data | 参考基因组比对率 Mapping rate | Q20/% | Q30/% | GC含量/% GC content |
Sad_1 | 94 092 386 | 91 107 390 | 86 158 306(94.57%) | 99.96 | 97.78 | 45.00 |
Sad_2 | 97 790 686 | 94 803 474 | 89 533 252(94.44%) | 99.96 | 97.71 | 45.00 |
Sad_3 | 89 825 602 | 86 701 034 | 80 875 819(93.28%) | 99.97 | 98.16 | 48.50 |
C_1 | 69 188 934 | 67 121 848 | 62 676 263(93.38%) | 99.84 | 97.85 | 46.00 |
C_2 | 75 845 456 | 73 401 010 | 67 841 183(92.43%) | 99.84 | 97.91 | 45.50 |
C_3 | 77 539 444 | 75 024 956 | 69 565 183(92.72%) | 99.82 | 97.81 | 46.00 |
Table 3
sRNA sequencing data production quality"
样本 Sample | 原始数据 Raw data | 有效数据 Valid data | 参考基因组比对率 Mapping rate | Q20/% | Q30/% | GC含量/% GC content |
Sad_1 | 10 567 624 | 7 951 578 | 7 868 882 (98.96%) | 97.92 | 96.91 | 51.40 |
Sad_2 | 9 796 916 | 6 971 109 | 6 893 729(98.89%) | 97.92 | 96.96 | 51.22 |
Sad_3 | 10 036 758 | 6 868 427 | 6 794 248 (98.92%) | 97.29 | 96.07 | 51.11 |
C_1 | 11 418 221 | 5 627 660 | 5 587 704 (99.18%) | 99.29 | 97.37 | 51.24 |
C_2 | 9 754 842 | 5 237 938 | 5 189 225 (99.07%) | 99.30 | 97.44 | 51.07 |
C_3 | 10 715 275 | 7 225 151 | 7 142 062(98.85%) | 99.23 | 97.18 | 50.95 |
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