Acta Veterinaria et Zootechnica Sinica ›› 2023, Vol. 54 ›› Issue (1): 338-350.doi: 10.11843/j.issn.0366-6964.2023.01.031
• BASIC VETERINARY MEDICINE • Previous Articles Next Articles
JIANG Nansong1,2, JI Xing1, WANG Yaxin1, SUN Chengtao1, WANG Yang1, CHEN Hongmei2, CHENG Longfei2, HUANG Yu2, WU Congming1*
Received:
2022-07-07
Online:
2023-01-23
Published:
2023-01-17
CLC Number:
JIANG Nansong, JI Xing, WANG Yaxin, SUN Chengtao, WANG Yang, CHEN Hongmei, CHENG Longfei, HUANG Yu, WU Congming. Prevalence and Transduction of Prophages in Methicillin-resistant Staphylococcus aureus ST9 of Swine Origin[J]. Acta Veterinaria et Zootechnica Sinica, 2023, 54(1): 338-350.
[1] | LAKHUNDI S, ZHANG K Y. Methicillin-resistant Staphylococcus aureus:molecular characterization, evolution, and epidemiology[J]. Clin Microbiol Rev, 2018, 31(4):e00020-18. |
[2] | VERKADE E, KLUYTMANS J. Livestock-associated Staphylococcus aureus CC398:Animal reservoirs and human infections[J]. Infect Genet Evol, 2014, 21:523-530. |
[3] | VOSS A, LOEFFEN F, BAKKER J, et al. Methicillin-resistant Staphylococcus aureus in pig farming[J]. Emerg Infect Dis, 2005, 11(12):1965-1966. |
[4] | CUI S H, LI J Y, HU C Q, et al. Isolation and characterization of methicillin-resistant Staphylococcus aureus from swine and workers in China[J]. J Antimicrob Chemother, 2009, 64(4):680-683. |
[5] | LINDSAY J A. Staphylococcus aureus genomics and the impact of horizontal gene transfer[J]. Int J Med Microbiol, 2014, 304(2):103-109. |
[6] | LINDSAY J A, HOLDEN M T G. Staphylococcus aureus:Superbug, super genome?[J]. Trends Microbiol, 2004, 12(8):378-385. |
[7] | KAHNKOV J, PANTǓČEK R, GOERKE C, et al. Multilocus PCR typing strategy for differentiation of Staphylococcus aureus siphoviruses reflecting their modular genome structure[J]. Environ Microbiol, 2010, 12(9):2527-2538. |
[8] | GOERKE C, PANTUCEK R, HOLTFRETER S, et al. Diversity of prophages in dominant Staphylococcus aureus clonal lineages[J]. J Bacteriol, 2009, 191(11):3462-3468. |
[9] | PRICE L B, STEGGER M, HASMAN H, et al. Staphylococcus aureus CC398:Host adaptation and emergence of methicillin resistance in livestock[J]. mBio, 2012, 3(1):e00305-11. |
[10] | DIENE S M, CORVAGLIA A R, FRANÇOIS P, et al. Prophages and adaptation of Staphylococcus aureus ST398 to the human clinic[J]. BMC Genomics, 2017, 18(1):133. |
[11] | UHLEMANN A C, PORCELLA S F, TRIVEDI S, et al. Identification of a highly transmissible animal-independent Staphylococcus aureus ST398 clone with distinct genomic and cell adhesion properties[J]. mbio, 2012, 3(2):e00027-12. |
[12] | KRAUSHAAR B, HAMMERL J A, KIENÖL M, et al. Acquisition of virulence factors in livestock-associated MRSA:Lysogenic conversion of CC398 strains by virulence gene-containing phages[J]. Sci Rep, 2017, 7(1):2004. |
[13] | UBELAKER M H, ROSENBLUM E D. Transduction of plasmid determinants in Staphylococcus aureus and Escherichia coli[J]. J Bacteriol, 1978, 133(2):699-707. |
[14] | SCHARN C R, TENOVER F C, GOERING R V. Transduction of staphylococcal cassette chromosome mec elements between strains of Staphylococcus aureus[J]. Antimicrob Agents Chemother, 2013, 57(11):5233-5238. |
[15] | LEE S M, ENDER M, ADHIKARI R, et al. Fitness cost of staphylococcal cassette chromosome mec in methicillin-resistant Staphylococcus aureus by way of continuous culture[J]. Antimicrob Agents Chemother, 2007, 51(4):1497-1499. |
[16] | MASLANOVA I, STRIBNA S, DOSKAR J, et al. Efficient plasmid transduction to Staphylococcus aureus strains insensitive to the lytic action of transducing phage[J]. FEMS Microbiol Lett, 2016, 363(19):fnw211. |
[17] | JIANG N S, WYRES K L, LI J, et al. Evolution and genomic insight into methicillin-resistant Staphylococcus aureus ST9 in China[J]. J Antimicrob Chemother, 2021, 76(7):1703-1711. |
[18] | SUN C T, CHEN B L, HULTH A, et al. Genomic analysis of Staphylococcus aureus along a pork production chain and in the community, Shandong Province, China[J]. Int J Antimicrob Agents, 2019, 54(1):8-15. |
[19] | ARNDT D, GRANT J R, MARCU A, et al. PHASTER:a better, faster version of the PHAST phage search tool[J]. Nucleic Acids Res, 2016, 44(W1):W16-W21. |
[20] | SONG W C, SUN H X, ZHANG C, et al. Prophage Hunter:an integrative hunting tool for active prophages[J]. Nucleic Acids Res, 2019, 47(W1):W74-W80. |
[21] | CAMACHO C, COULOURIS G, AVAGYAN V, et al. BLAST+:architecture and applications[J]. BMC Bioinformatics, 2009, 10:421. |
[22] | BORTOLAIA V, KAAS R S, RUPPE E, et al. ResFinder 4. 0 for predictions of phenotypes from genotypes[J]. J Antimicrob Chemother, 2020, 75(12):3491-3500. |
[23] | LIU B, ZHENG D D, ZHOU S Y, et al. VFDB 2022:a general classification scheme for bacterial virulence factors[J]. Nucleic Acids Res, 2022, 50(D1):D912-D917. |
[24] | SULLIVAN M J, PETTY N K, BEATSON S A. Easyfig:va genome comparison visualizer[J]. Bioinformatics, 2011, 27(7):1009-1010. |
[25] | KATOH K, STANDLEY D M. MAFFT multiple sequence alignment software version 7:improvements in performance and usability[J]. Mol Biol Evol, 2013, 30(4):772-780. |
[26] | PRICE M N, DEHAL P S, ARKIN A P. FastTree:computing large minimum evolution trees with profiles instead of a distance matrix[J]. Mol Biol Evol, 2009, 26(7):1641-1650. |
[27] | LETUNIC I, BORK P. Interactive Tree Of Life (iTOL) v4:recent updates and new developments[J]. Nucleic Acids Res, 2019, 47(W1):W256-W259. |
[28] | YU G C, LAM T T Y, ZHU H C, et al. Two methods for mapping and visualizing associated data on phylogeny using ggtree[J]. Mol Biol Evol, 2018, 35(12):3041-3043. |
[29] | KRAUSZ K L, BOSE J L. Bacteriophage transduction in Staphylococcus aureus:Broth-based method[J]. Methods Mol Biol, 2016, 1373:63-68. |
[30] | OLSON M E. Bacteriophage transduction in Staphylococcus aureus[J]. Methods Mol Biol, 2016, 1373:69-74. |
[31] | 汪宇. 猪源MRSA和多药耐药基因cfr的流行情况调查和传播机制研究[D]. 北京:中国农业大学, 2012.WANG Y. Study on the prevalence and mechanism of dissemination on MRSA and multidrug resistant gene cfr from swine[D]. China Agricultural University, 2012. (in Chinese) |
[32] | WU Z W, LI F, LIU D L, et al. Novel type XII staphylococcal cassette chromosome mec harboring a new cassette chromosome recombinase, ccrC2[J]. Antimicrob Agents Chemother, 2015, 59(12):7597-7601. |
[33] | 李君. 猪源耐甲氧西林金黄色葡萄球菌流行病学特征及遗传进化分析[D]. 北京:中国农业大学, 2017.LI J. Epidemiological characteristics and phylogenetic analysis of pig associated Methicillin-resistant Staphylococcus aureus[D]. Beijing:China Agricultural University, 2017. (in Chinese) |
[34] | CHEN C J, HSUEH P R, SU L H, et al. Change in the molecular epidemiology of methicillin-resistant Staphylococcus aureus bloodstream infections in Taiwan[J]. Diagn Microbiol Infect Dis, 2009, 65(2):199-201. |
[35] | PAN E S, DIEP B A, CHARLEBOIS E D, et al. Population dynamics of nasal strains of methicillin-resistant Staphylococcus aureus and their relation to community-associated disease activity[J]. J Infect Dis, 2005, 192(5):811-818. |
[36] | 李德喜. 恶唑烷酮类耐药基因cfr和optrA在猪源MRSA和CoNS中流行及传播机制的研究[D]. 北京:中国农业大学, 2016.LI D X. The epidemiological study on the oxazolidinone resistance genes cfr and optrA and theirs transmission mechanism among MRSA and CoNS isolates from swine[D]. Beijing:China Agricultural University, 2012. (in Chinese) |
[37] | NIELSEN K L, PEDERSEN T M, UDEKWU K I, et al. Fitness cost:a bacteriological explanation for the demise of the first international methicillin-resistant Staphylococcus aureus epidemic[J]. J Antimicrob Chemother, 2012, 67(6):1325-1332. |
[38] | KWAN T, LIU J, DUBOW M, et al. The complete genomes and proteomes of 27 Staphylococcus aureus bacteriophages[J]. Proc Natl Acad Sci U S A, 2005, 102(14):5174-5179. |
[39] | LABRIE S J, SAMSON J E, MOINEAU S. Bacteriophage resistance mechanisms[J]. Nat Rev Microbiol, 2010, 8(5):317-327. |
[40] | CANCHAYA C, PROUX C, FOURNOUS G, et al. Prophage genomics[J]. Microbiol Mol Biol Rev, 2003, 67(2):238-276. |
[41] | MCCARTHY A J, WITNEY A A, LINDSAY J A. Staphylococcus aureus temperate bacteriophage:Carriage and horizontal gene transfer is lineage associated[J]. Front Cell Infect Microbiol, 2012, 2:6. |
[42] | DEGHORAIN M, VAN MELDEREN L. The Staphylococci phages family:an overview[J]. Viruses, 2012, 4(12):3316-3335. |
[43] | WINSTEL V, LIANG C G, SANCHEZ-CARBALLO P, et al. Wall teichoic acid structure governs horizontal gene transfer between major bacterial pathogens[J]. Nat Commun, 2013, 4:2345. |
[44] | XIA G Q, CORRIGAN R M, WINSTEL V, et al. Wall teichoic Acid-dependent adsorption of staphylococcal siphovirus and myovirus[J]. J Bacteriol, 2011, 193(15):4006-4009. |
[45] | TANG Y Y, NIELSEN L N, HVITVED A, et al. Commercial biocides induce transfer of prophage Φ13 from human strains of Staphylococcus aureus to livestock CC398[J]. Front Microbiol, 2017, 8:2418. |
[46] | XIA G Q, WOLZ C. Phages of Staphylococcus aureus and their impact on host evolution[J]. Infect Genet Evol, 2014, 21:593-601. |
[47] | MELNYK A H, WONG A, KASSEN R. The fitness costs of antibiotic resistance mutations[J]. Evol Appl, 2015, 8(3):273-283. |
[1] | HAN Yang, GUAN Shuaiyin, LI Zhen, ZHOU Saisai, YUAN Honggen, SONG Yunfeng. Prokaryotic Expression and Protein Activity of Porcine Circovirus Type 3 Rep [J]. Acta Veterinaria et Zootechnica Sinica, 2024, 55(5): 2061-2071. |
[2] | MA Rumeng, ZHAO Yuliang, MA Mingshuang, GUO Guihai, LIU Xinzi, LI Jiaxuan, CUI Wen, JIANG Yanping, SHAN Zhifu, ZHOU Han, WANG Li, QIAO Xinyuan, TANG Lijie, WANG Xiaona, LI Yijing. Comparative Study on the Immune Response Induced by the Different Porcine Receptor Bacteria with Expressing the Protective Antigen S1 of Porcine Epidemic Diarrhea Virus [J]. Acta Veterinaria et Zootechnica Sinica, 2024, 55(5): 2090-2099. |
[3] | WANG Jing, ZHANG Shujuan, HU Xia, LIU Xiangyang, ZHANG Xingcui, SONG Zhenhui. CD44 Regulates Na+/H+ Exchanger 3 Activity by Influencing Porcine Epidemic Diarrhea Virus Replication [J]. Acta Veterinaria et Zootechnica Sinica, 2024, 55(5): 2176-2185. |
[4] | HU Zeqi, LI Runcheng, TAN Zuming, XIE Xiuyan, WANG Jiangping, QIN Lejuan, LI Rong, GE Meng. Establishment and Preliminary Application of PEDV, PoRVA and PDCoV TaqMan Triple RT-qPCR Assay [J]. Acta Veterinaria et Zootechnica Sinica, 2024, 55(5): 2267-2272. |
[5] | LAN Xinrui, ZHAO Baobao, ZHANG Bihan, LIN Xiaoyu, MA Huiming, WANG Yongsheng. Effects of β-sitosterol on Porcine Oocyte Maturation and Embryonic Development in Vitro [J]. Acta Veterinaria et Zootechnica Sinica, 2024, 55(4): 1629-1637. |
[6] | LIN Lili, ZHANG Mengdi, ZHU Linlin, MA Hailong, SUN Qi, HE Qigai, ZHANG Mengjia, LI Wentao. Establishment of Neutralizing Antibody Detection Method based on Recombinant Fluorescent Virus of Porcine Epidemic Diarrhea Virus GⅡb Strain [J]. Acta Veterinaria et Zootechnica Sinica, 2024, 55(4): 1649-1660. |
[7] | JING Yang, WANG Yumiao, LI Yang, CHANG Hui, MA Zhiqian, LI Zhiwei, XIAO Shuqi. Construction of MARC-145ORF6 Cell Line Stably Overexpressing PRRSV M Protein and Its Effect on PRRSV Proliferation [J]. Acta Veterinaria et Zootechnica Sinica, 2024, 55(3): 1159-1169. |
[8] | ZHANG Baoge, HUANG Yaqin, CAI Jinshuang, ZHU Chenguang, LI Yufeng. Preparation of Monoclonal Antibodies to Porcine Circovirus Type 3 Cap Protein and the Establishment of a Blocking ELISA Assay [J]. Acta Veterinaria et Zootechnica Sinica, 2024, 55(3): 1170-1178. |
[9] | WANG Kang, LIU Geyan, WANG Yu, YANG Zhen, TANG Xinwei, CAO Sanjie, HUANG Xiaobo, YAN Qigui, WU Rui, ZHAO Qin, DU Senyan, WEN Xintian, WEN Yiping. Preparation of Glaesserella parasuis Ghosts Vaccine Delivering Porcine Circovirus Type 2 DNA Vaccine and Evaluation of Its Immunoprotective Effect in Mice [J]. Acta Veterinaria et Zootechnica Sinica, 2024, 55(3): 1179-1191. |
[10] | REN Lixin, ZHANG Jingyi, XU Shasha, YANG Liu, ZHANG Xingcui, SONG Zhenhui. Effect of ACE2 on Porcine Intestinal Epithelial Cells Infected with Porcine Epidemic Diarrhea Virus in vitro [J]. Acta Veterinaria et Zootechnica Sinica, 2024, 55(3): 1238-1248. |
[11] | CHEN Shuyu, ZHU Xuejiao, ZHOU Jinzhu, TAO Ran, ZHANG Xuehan, Suolangsizhu, Gongga, LI Bin. Inhibition of Porcine Rotavirus in vitro Replication by Guanylate-binding Proteins GBP1 and GBP2 [J]. Acta Veterinaria et Zootechnica Sinica, 2024, 55(1): 245-257. |
[12] | SONG Wenyan, ZHANG Hanwen, WU Aodi, ZHANG Liyan, LIU Zhao, YE Tongtong, CHEN Chuangfu, SHENG Jinliang. Screening of Nanobodies against Porcine Reproductive and Respiratory Syndrome Virus GP5 Protein and Exploration of Their Inhibitory Effect on Virus Replication [J]. Acta Veterinaria et Zootechnica Sinica, 2024, 55(1): 258-270. |
[13] | ZHOU Jianhao, WANG Dongfang, LIU Ying, WANG Shujuan, MA Zhenyuan, XIE Caihua, ZHAO Xueli, YANG Haibo, FENG Guidan, KANG Taisheng, HU Yufeng, LI Bowen, YAN Ruoqian. Establishment and Preliminary Application of a Quantitative Droplet Digital PCR Assay for Porcine Epidemic Diarrhea Virus [J]. Acta Veterinaria et Zootechnica Sinica, 2024, 55(1): 413-418. |
[14] | WANG Zhiyuan, LIU Boqi, XU Zhiying, XU Sijia, XING Jiabao, ZHANG Guihong, WANG Heng, SUN Yankuo. Analysis of ORF5 Gene Variation of Porcine Reproductive and Respiratory Syndrome Virus in Local Regions of China from 2021 to 2022 [J]. Acta Veterinaria et Zootechnica Sinica, 2023, 54(9): 3812-3823. |
[15] | FAN Yandi, YANG Danjiao, YE Zhongming, ZHANG Min, LAN Lan, WANG Jinghao, ZHOU Han, KANG Runmin, YU Jifeng, ZHANG Zhidong, LI Yanmin, ZHOU Long. Metagenomic Analysis of Viruses in Clinical Samples of Respiratory Diseases in Tibetan Pigs [J]. Acta Veterinaria et Zootechnica Sinica, 2023, 54(9): 3836-3847. |
Viewed | ||||||
Full text |
|
|||||
Abstract |
|
|||||