Acta Veterinaria et Zootechnica Sinica ›› 2022, Vol. 53 ›› Issue (11): 3721-3730.doi: 10.11843/j.issn.0366-6964.2022.11.001
• REVIEW • Previous Articles Next Articles
ZOU Huiying, LI Junliang, ZHU Huabin*
Received:
2022-03-17
Online:
2022-11-23
Published:
2022-11-25
CLC Number:
ZOU Huiying, LI Junliang, ZHU Huabin. Progress on Research and Application of Prime Editing System[J]. Acta Veterinaria et Zootechnica Sinica, 2022, 53(11): 3721-3730.
[1] | CONG L, RAN F A, COX D, et al.Multiplex genome engineering using CRISPR/Cas systems[J].Science, 2013, 339(6121):819-823. |
[2] | JINEK M, CHYLINSKI K, FONFARA I, et al.A programmable dual-RNA-guided DNA endonuclease in adaptive bacterial immunity[J].Science, 2012, 337(6096):816-821. |
[3] | SYMINGTON L S, GAUTIER J.Double-strand break end resection and repair pathway choice[J].Annu Rev Genet, 2011, 45:247-271. |
[4] | DEB S, CHOUDHURY A, KHARBYNGAR B, et al.Applications of CRISPR/Cas9 technology for modification of the plant genome[J].Genetica, 2022, 150(1):1-12. |
[5] | LI G L, LI X Y, ZHUANG S K, et al.Gene editing and its applications in biomedicine[J].Sci China Life Sci, 2022, 65(4):660-700. |
[6] | PERISSE I V, FAN Z Q, SINGINA G N, et al.Improvements in gene editing technology boost its applications in livestock[J].Front Genet, 2021, 11:614688. |
[7] | KOMOR A C, KIM Y B, PACKER M S, et al.Programmable editing of a target base in genomic DNA without double-stranded DNA cleavage[J].Nature, 2016, 533(7603):420-424. |
[8] | GAUDELLI N M, KOMOR A C, REES H A, et al.Programmable base editing of A·T to G·C in genomic DNA without DNA cleavage[J].Nature, 2017, 551(7681):464-471. |
[9] | JIN S, ZONG Y, GAO Q, et al.Cytosine, but not adenine, base editors induce genome-wide off-target mutations in rice[J].Science, 2019, 364(6437):292-295. |
[10] | ZUO E W, SUN Y D, WEI W, et al.Cytosine base editor generates substantial off-target single-nucleotide variants in mouse embryos[J].Science, 2019, 364(6437):289-292. |
[11] | ANZALONE A V, RANDOLPH P B, DAVIS J R, et al.Search-and-replace genome editing without double-strand breaks or donor DNA[J].Nature, 2019, 576(7785):149-157. |
[12] | CHEN P J, HUSSMANN J A, YAN J, et al.Enhanced prime editing systems by manipulating cellular determinants of editing outcomes[J].Cell, 2021, 184(22):5635-5652.e29. |
[13] | DA SILVA J F, OLIVEIRA G P, ARASA-VERGE E A, et al.Prime editing efficiency and fidelity are enhanced in the absence of mismatch repair[J].Nat Commun, 2022, 13(1):760. |
[14] | JIANG T T, ZHANG X O, WENG Z P, et al.Deletion and replacement of long genomic sequences using prime editing[J].Nat Biotechnol, 2022, 40(2):227-234. |
[15] | CHOI J, CHEN W, SUITER C C, et al.Precise genomic deletions using paired prime editing[J].Nat Biotechnol, 2022, 40(2):218-226. |
[16] | ANZALONE A V, GAO X D, PODRACKY C J, et al.Programmable deletion, replacement, integration and inversion of large DNA sequences with twin prime editing[J].Nat Biotechnol, 2022, 40(5):731-740. |
[17] | WANG J L, HE Z, WANG G Q, et al.Efficient targeted insertion of large DNA fragments without DNA donors[J].Nat Methods, 2022, 19(3):331-340. |
[18] | LIU P P, LIANG S Q, ZHENG C W, et al.Improved prime editors enable pathogenic allele correction and cancer modelling in adult mice[J].Nat Commun, 2021, 12(1):2121. |
[19] | XU W, ZHANG C W, YANG Y X, et al.Versatile nucleotides substitution in plant using an improved prime editing system[J].Mol Plant, 2020, 13(5):675-678. |
[20] | XU W, YANG Y X, YANG B Y, et al.A design optimized prime editor with expanded scope and capability in plants[J].Nat Plants, 2022, 8(1):45-52. |
[21] | LU Y M, TIAN Y F, SHEN R D, et al.Precise genome modification in tomato using an improved prime editing system[J].Plant Biotechnol J, 2021, 19(3):415-417. |
[22] | LI X Y, WANG X, SUN W J, et al.Enhancing prime editing efficiency by modified pegRNA with RNA G-quadruplexes[J].J Mol Cell Biol, 2022, 14(4):mjac022. |
[23] | ZHANG G Q, LIU Y, HUANG S S, et al.Enhancement of prime editing via xrRNA motif-joined pegRNA[J].Nat Commun, 2022, 13(1):1856. |
[24] | NELSON J W, RANDOLPH P B, SHEN S P, et al.Engineered pegRNAs improve prime editing efficiency[J].Nat Biotechnol, 2022, 40(3):402-410. |
[25] | LI X S, ZHOU L N, GAO B Q, et al.Highly efficient prime editing by introducing same-sense mutations in pegRNA or stabilizing its structure[J].Nat Commun, 2022, 13(1):1669. |
[26] | LIN Q P, JIN S, ZONG Y, et al.High-efficiency prime editing with optimized, paired pegRNAs in plants[J].Nat Biotechnol, 2021, 39(8):923-927. |
[27] | WOLFF J H, HALDRUP J, THOMSEN E A, et al.piggyPrime:high-efficacy prime editing in human cells using piggyBac-based DNA transposition[J].Front Genome Ed, 2021, 3:786893. |
[28] | EGGENSCHWILER R, GSCHWENDTBERGER T, FELSKI C, et al.A selectable all-in-one CRISPR prime editing piggyBac transposon allows for highly efficient gene editing in human cell lines[J].Sci Rep, 2021, 11(1):22154. |
[29] | WANG Q, LIU J, JANSSEN J M, et al.Broadening the reach and investigating the potential of prime editors through fully viral gene-deleted adenoviral vector delivery[J].Nucleic Acids Res, 2021, 49(20):11986-12001. |
[30] | ADIKUSUMA F, LUSHINGTON C, ARUDKUMAR J, et al.Optimized nickase- and nuclease-based prime editing in human and mouse cells[J].Nucleic Acids Res, 2021, 49(18):10785-10795. |
[31] | LIU B, DONG X L, CHENG H Y, et al.A split prime editor with untethered reverse transcriptase and circular RNA template[J].Nat Biotechnol, 2022, doi:10.1038/s41587-022-01255-9. |
[32] | XU R F, LI J, LIU X S, et al.Development of plant prime-editing systems for precise genome editing[J].Plant Commun, 2020, 1(3):100043. |
[33] | SIMON D A, TÁLAS A, KULCSÁR P I, et al.PEAR, a flexible fluorescent reporter for the identification and enrichment of successfully prime edited cells[J].Elife, 2022, 11:e69504. |
[34] | SCHENE I F, JOORE I P, BAIJENS J H L, et al.Mutation-specific reporter for optimization and enrichment of prime editing[J].Nat Commun, 2022, 13(1):1028. |
[35] | SVRVN D, SCHNEIDER A, MIRCETIC J, et al.Efficient generation and correction of mutations in human iPS cells utilizing mRNAs of CRISPR base editors and prime editors[J].Genes (Basel), 2020, 11(5):511. |
[36] | SCHENE I F, JOORE I P, OKA R, et al.Prime editing for functional repair in patient-derived disease models[J].Nat Commun, 2020, 11(1):5352. |
[37] | GEURTS M H, DE POEL E, PLEGUEZUELOS-MANZANO C, et al.Evaluating CRISPR-based prime editing for cancer modeling and CFTR repair in organoids[J].Life Sci Alliance, 2021, 4(10):e202000940. |
[38] | LIU Y, LI X Y, HE S T, et al.Efficient generation of mouse models with the prime editing system[J].Cell Discov, 2020, 6(1):27. |
[39] | GAO P, LYU Q, GHANAM A R, et al.Prime editing in mice reveals the essentiality of a single base in driving tissue-specific gene expression[J].Genome Biol, 2021, 22(1):83. |
[40] | PETRI K, ZHANG W T, MA J Y et al.CRISPR prime editing with ribonucleoprotein complexes in zebrafish and primary human cells[J].Nat Biotechnol, 2022, 40(2):189-193. |
[41] | BOSCH J A, BIRCHAK G, PERRIMON N.Precise genome engineering in Drosophila using prime editing[J].Proc Natl Acad Sci U S A, 2021, 118(1):e2021996118. |
[42] | LIN Q P, ZONG Y, XUE C X, et al.Prime genome editing in rice and wheat[J].Nat Biotechnol, 2020, 38(5):582-585. |
[43] | TANG X, SRETENOVIC S, REN Q R, et al.Plant prime editors enable precise gene editing in rice cells[J].Mol Plant, 2020, 13(5):667-670. |
[44] | LI H Y, LI J Y, CHEN J L, et al.Precise modifications of both exogenous and endogenous genes in rice by prime editing[J].Mol Plant, 2020, 13(5):671-674. |
[45] | BUTT H, RAO G S, SEDEEK K, et al.Engineering herbicide resistance via prime editing in rice[J].Plant Biotechnol J, 2020, 18(12):2370-2372. |
[46] | HUA K, JIANG Y W, TAO X P, et al.Precision genome engineering in rice using prime editing system[J].Plant Biotechnol J, 2020, 18(11):2167-2169. |
[47] | JIANG Y Y, CHAI Y P, LU M H, et al.Prime editing efficiently generates W542L and S621I double mutations in two ALS genes in maize[J].Genome Biol, 2020, 21(1):257. |
[48] | PERROUD P F, GUYON-DEBAST A, VEILLET F, et al.Prime Editing in the model plant Physcomitrium patens and its potential in the tetraploid potato[J].Plant Sci, 2022, 316:111162. |
[49] | WANG L, KAYA H B, ZHANG N, et al.Spelling changes and fluorescent tagging with prime editing vectors for plants[J].Front Genome Ed, 2021, 3:617553. |
[50] | BHAGWAT A M, GRAUMANN J, WIEGANDT R, et al.multicrispr:gRNA design for prime editing and parallel targeting of thousands of targets[J].Life Sci Alliance, 2020, 3(11):e202000757. |
[51] | HSU J Y, GRVNEWALD J, SZALAY R, et al.PrimeDesign software for rapid and simplified design of prime editing guide RNAs[J].Nat Commun, 2021, 12(1):1034. |
[52] | CHOW R D, CHEN J S, SHEN J, et al.A web tool for the design of prime-editing guide RNAs[J].Nat Biomed Eng, 2021, 5(2):190-194. |
[53] | MORRIS J A, RAHMAN J A, GUO X Y, et al.Automated design of CRISPR prime editors for 56, 000 human pathogenic variants[J].iScience, 2021, 24(11):103380. |
[54] | HWANG G H, JEONG Y K, HABIB O, et al.PE-Designer and PE-Analyzer:web-based design and analysis tools for CRISPR prime editing[J].Nucleic Acids Res, 2021, 49(W1):W499-W504. |
[55] | JIN S, LIN Q P, LUO Y F, et al.Genome-wide specificity of prime editors in plants[J].Nat Biotechnol, 2021, 39(10):1292-1299. |
[56] | KIM D Y, MOON S B, KO J H, et al.Unbiased investigation of specificities of prime editing systems in human cells[J].Nucleic Acids Res, 2020, 48(18):10576-10589. |
[1] | WANG Yuanqing, WANG Jing, ZHU Bo, CHEN Yan, XU Lingyang, WANG Zezhao, ZHANG Lupei, GAO Huijiang, LI Junya, GAO Xue. Genomic Mating Research and Its Application in Livestock and Poultry [J]. Acta Veterinaria et Zootechnica Sinica, 2024, 55(1): 1-10. |
[2] | ZHANG De'an, YANG Ruozhu, LIU Jie, LIU Dewu, DENG Ming, LIU Guangbin, SUN Baoli, GUO Yongqing, LI Yaokun. Expression Analysis of Transcriptome in the Liver of Chuanzhong Black Goats Fed with Silage Neolamarckia Cadamba Substitute for Silage Corn [J]. Acta Veterinaria et Zootechnica Sinica, 2024, 55(1): 232-244. |
[3] | LI Chao, ZHAO Xueyan, WANG Yongjun, WANG Yanping, REN Yifan, LI Jingxuan, WANG Huaizhong, WANG Jiying, SONG Qinye. Analysis on the Structural Composition and Function of Bacterial Microbiota of Caecum and Colon in Laiwu and DLY pigs [J]. Acta Veterinaria et Zootechnica Sinica, 2023, 54(12): 5033-5045. |
[4] | LI Chunyan, ZHANG Yan, Lü Chunrong, DENG Weidong, QUAN Guobo. Research Progress on Antioxidant Mechanisms of Melatonin and Its Application in Cryopreservation of Mammalian Spermatozoa [J]. Acta Veterinaria et Zootechnica Sinica, 2023, 54(11): 4468-4476. |
[5] | GUO Yanli, LI Keqiang, BAI Shaochuan, WANG Tao, WANG Dehe, WANG Qi, LI Lanhui. The Structure, Activity Regulation of ALV-E and Its Effects on Host Function [J]. Acta Veterinaria et Zootechnica Sinica, 2023, 54(7): 2683-2691. |
[6] | AN Zongqi, ZHAN Siyuan, LI Li, ZHANG Hongping. ceRNA-mediated Function of CircRNA on Critical Economic Traits in Animals [J]. Acta Veterinaria et Zootechnica Sinica, 2023, 54(6): 2215-2222. |
[7] | LIU Shuang, HE Lixia, MA Jun, FENG Xue, YANG Mengli, WANG Shuzhe, YANG Runjun, FANG Xibi, XIAN Hailong, WANG Yongkang, ZHANG Lupei, MA Yun. Analysis on Genetic Background and Body Size Indexes and Beef-purpose Index of Guyuan Cattle [J]. Acta Veterinaria et Zootechnica Sinica, 2023, 54(6): 2376-2388. |
[8] | YANG Sukun, DONG Yimeng, WANG Hongliang, ZHAO Xitang, CHEN Xu, XING Xiumei. Genetic Diversity Analysis of Stud Tahe Red Deer Based on the Gene Fragments of mtDNA and Y Chromosome [J]. Acta Veterinaria et Zootechnica Sinica, 2023, 54(6): 2402-2413. |
[9] | MA Keyan, HAN Jintao, BAI Yaqin, LI Taotao, MA Youji. Genetic Diversity Analysis of Yongdeng Qishan Sheep Based on Specific-Locus Amplified Fragment Sequencing [J]. Acta Veterinaria et Zootechnica Sinica, 2023, 54(5): 1939-1950. |
[10] | WANG Kaiming, YU Zonggang, XU Xueli, AI Nini, LI Xintong, HE Jun, TAO Deng, ZHANG Shuo, MA Haiming, ZHANG Yuebo. Effect of Interfering Mtmr3 on C2C12 Cells Proliferation and Differentiation [J]. Acta Veterinaria et Zootechnica Sinica, 2023, 54(4): 1478-1489. |
[11] | HAN Lulu, HAN Deping, ZHAO Qinan, DIAO Qiyu, CUI Kai. Research Progress of Intestinal Injury in Young Farm Animals under Stress Mediated by miRNA [J]. Acta Veterinaria et Zootechnica Sinica, 2023, 54(3): 877-888. |
[12] | LIU Ling, WANG Dandan, CUI Kai, MA Yuehui, JIANG Lin. Advances of Disease-Resistant Breeding on Porcine Reproductive and Respiratory Syndrome [J]. Acta Veterinaria et Zootechnica Sinica, 2023, 54(2): 434-442. |
[13] | YANG Xiaogeng, ZHANG Huizhu, LI Jian, XIANG Hua, HE Honghong. Research Progress of the DNA Methylation in Mammalian Oocyte and Early Embryo Development [J]. Acta Veterinaria et Zootechnica Sinica, 2023, 54(2): 443-450. |
[14] | LIU Jiqiang, HAO Xiaodong, WU Lina, LIAO Shiying, FENG Yifang, MI Shirong, LIU Shen, LIU Jian, ZHANG Longchao. Application of Whole Genome SNP Genotyping Technology in Livestock and Poultry Genetics and Breeding [J]. Acta Veterinaria et Zootechnica Sinica, 2022, 53(12): 4123-4137. |
[15] | DAI Yuxing,SHI Yinyin,WEN Zuochen,LUO Yunyan,ZHU Xueli,ZHENG Chunting,LI Shuying,HONG Liang,ZHANG Jianbin,GUO Liang,PU Lei. The Effect of Hlcs Interference on Glycolytic Gene Expression in C2C12 Cells after Myogenic Lipogenic Differentiation [J]. Acta Veterinaria et Zootechnica Sinica, 2022, 53(10): 3391-3402. |
Viewed | ||||||
Full text |
|
|||||
Abstract |
|
|||||