畜牧兽医学报 ›› 2009, Vol. 40 ›› Issue (4): 589-594.doi:

• 研究简报 • 上一篇    下一篇

牛消化道I型肽载体克隆测序及编码蛋白结构分析

林雪彦,李燕,姜运良,苏鹏程,王云,王中华*   

  1. 山东农业大学动物科技学院,泰安 271018
  • 收稿日期:1900-01-01 修回日期:1900-01-01 出版日期:2009-04-25 发布日期:2009-04-25
  • 通讯作者: 王中华

The Cloning, Sequencing, and Protein Structure Analysis of Type ⅠSmall Peptide Transporter in the Gastrointestinal Tissue of Bovine

LIN Xue-yan, LI Yan, JIANG Yun-liang, SU Peng-cheng, WANG Yun, WANG Zhong-hua*   

  1. College of Animal Science and Technology, Shandong Agricultural University, Taian 271018, China
  • Received:1900-01-01 Revised:1900-01-01 Online:2009-04-25 Published:2009-04-25

摘要: 从牛瓣胃上皮提取RNA,根据已知的人、鼠、兔、羊PepT1序列设计引物,PCR扩增目的片段cDNA,扩增产物经纯化、克隆后测序。克隆测序片段为1 566 bp(DQ309694),与其它动物已知PepT1序列比对,发现该片段位于第3~10跨膜结构域之间。牛测定序列与人、鼠、兔、羊、狗、鸡和猪PepT1相应片段核苷酸序列同源性分别为82.89%、80.14%、78.93%、96.04%、83.08%、63.90%和85.66%,相应片段氨基酸序列同源性分别为81.45%、79.62%、76.25%、94.06%、81.49%、61.41%和83.56%。对8种动物(牛、人、鼠、兔、羊、狗、鸡、猪)测序片段内氨基酸序列同源性分析表明,PepT1是高度保守的蛋白,其中跨膜结构域的氨基酸序列保守性高于膜外环。8种动物PepT1测序片段内各跨膜结构域的氨基酸序列同源性均在90%以上,第3、4、5、6、7、8、9和10跨膜结构域的氨基酸序列同源性分别为90.97%、91.07%、97.62%、93.45%、94.05%、91.67%、91.45%和95.83%。8种动物测序片段内膜外环的氨基酸序列同源性在70%~99%之间,以第4-5跨膜结构域之间膜外环的同源性最高,9-10跨膜结构域之间膜外环的同源性最低,3-4、4-5、5-6、6-7、7-8、8-9、9-10跨膜结构域之间膜外环的氨基酸序列同源性分别为77.63%、98.86%、86.72%、90.13%、91.25%、88.33% 和71.74%。9-10结构域之间是1个位于细胞外的大膜外环,可能对底物的识别有重要作用,牛在此区域与鸡相同区域的氨基酸序列同源性仅为29.3%,与大鼠、狗、人、兔、猪和羊相应序列的同源性依次为65.17%、71.64%、67.16%、60.20%、73.13%和88.56%。对测序BPepT1片段编码蛋白的糖基化和磷酸化位点分析表明,测序片段编码蛋白共有6个N-糖基化位点和3个蛋白激酶C依赖性(PKC)磷酸化位点。

Abstract: cDNA was synthesized using the whole RNAs extracted from bovine omasal flakes in the present study. The cDNA of bovine type Ⅰ small peptide transporter (BPepT1) was amplified by RT-PCR using primers designed according to the published sequences of human, mouse, rabbit, and sheep PepT1 in GenBank. The amplified segment was sequenced after purifying and cloning. After comparing with the published PepT1 sequences of other animals, the 1 566 bp sequenced segment (DQ309694) was a sequence encoding the peptide chain from 3rd to 10th transmembrane structural domains of BPepT1. Homologous analysis indicated that the sequenced segments of BPepT1 had 82.89%, 80.14%, 78.93%, 96.04%, 83.08%, 63.90%, 85.66% nucleotide identity and 81.45%, 79.62%, 76.25%, 94.06%, 81.49%, 61.41%, 83.56% amino acid identity with the corresponding segments of human, rat, rabbit, sheep, dog, chicken, and pig PepT1, respectively. Comparison of the PepT1 amino acid sequences encoded by the sequenced segments of eight animal species (bovine, human, mouse, rabbit, sheep, dog, chick, and pig) indicated that PepT1 was a highly conservative protein during evolution, and the amino acid sequences in the transmembrane structural domains were more conservative than those in the outside domain sequences. The amino acid identities of the 12 structural domains were all above 90%, and the identities from 3rd to 10th domains were 90.97%, 91.07%, 97.62%, 93.45%, 94.05%, 91.67%, 91.45%, and 95.83%, respectively. The amino acid identities of the outside domain regions ranged from 70% to 99%, and the amino acid identities of the 3-4, 4-5, 5-6, 6-7, 7-8, 8-9, and 9-10 outside-domain regions were 77.63%, 98.86%, 86.72%, 90.13%, 91.25%, 88.33%, and 71.74%, respectively. The outside domain region between the 9-10 trans-membrane domains is a big extracellular loop, which may be an important structure in substrate recognition by PepT1. The amino acid identity in the region between bovine and chick was quite and only 29.3%, but the amino acid identities between bovine and mouse, dog, human, rabbit, pig, or sheep were 65.17%, 71.64%, 67.16%, 60.20%, 73.13%, and 88.56%, respectively. Predicated from the published consensus amino acid sequences, there were six N-linked glycosylation sites, three cAMP-dependent protein kinase (PKA) sites, and one protein kinase C (PKC) site in the amino acid sequence encoded by the sequenced segment of BPepT1.