畜牧兽医学报 ›› 2008, Vol. 39 ›› Issue (4): 410-416.doi:

• 遗传繁育 • 上一篇    下一篇

7个牛品种PON2基因第9外显子SSCP分析及其外显子多态性扫描

姬爱国,许尚忠,淮亚红,高雪,周正奎,任红艳,陈金宝   

  1. 1 西北农林科技大学 动物科技学院,杨凌 712100;2 中国农业科学院北京畜牧兽医研究所,北京 100094
  • 收稿日期:1900-01-01 修回日期:1900-01-01 出版日期:2008-04-24 发布日期:2008-04-24

Polymorphisms Scanning in Exons of the PON2 Gene and Analysis of Exon 9 with SSCP in Seven Bovine Breeds

JI Ai-guo, XU Shang-zhong, HUAI Ya-hong, GAO Xue, ZHOU Zheng-kui, REN Hong-yan, CHEN Jin-bao   

  1. 1 College of Animal Science and Technology, Northwest A&F University,Yangling 712100, China; 2 Institute of Animal Science, Chinese Academy of Agricultural Sciences, Beijing 100094, China
  • Received:1900-01-01 Revised:1900-01-01 Online:2008-04-24 Published:2008-04-24

摘要: 对氧磷酶2 (Paraoxonase-2, PON2) 产物是脂肪代谢过程中的抗氧化酶,被确定为影响相关重大心血管疾病和人类寿命的重要候选基因。本研究利用直接测序法对 PON2 基因所有外显子进行多态位点扫描,利用PCR-SSCP 技术对中国西门塔尔牛、鲁西牛、秦川牛、晋南牛、荷斯坦牛、摩拉水牛和尼里-拉菲水牛7个品种的478头个体PON2基因第9外显子T98C位点进行多态性分析。结果表明,PON2 基因外显子上共发现4个单核苷酸突变位点,但均未引起氨基酸的改变;第9外显子扩增大小为167 bp的片段存在单链构象多态性。除鲁西牛和荷斯坦牛外,其它5个品种牛在该基因座位都处于Hardy-Weinberg 平衡状态(P > 0.05)。鲁西牛、南阳牛、晋南牛和荷斯坦牛4个群体处于中度多态(0.25 < PIC < 0.50),其它3个牛种为低度多态。除摩拉水牛和尼里-拉菲水牛不存在AA基因型外,其它5个牛品种中均存在AA、AB、BB 3种基因型,但优势等位基因在7个品种牛群体中存在差异,基因型频率在鲁西牛和南阳牛中 AA>AB>BB;晋南牛则3种基因型频率之比约为1∶1∶1;中国西门塔尔牛则出现严重的偏态,B等位基因为绝对优势等位基因;2种水牛中,BB基因型为优势基因型,B等位基因为优势等位基因。利用 SAS 9.1 软件 GLM 过程分析基因型均值,用邓肯法(Duncan’s)进行基因型间的多重比较,将该基因座不同基因型与7个牛品种间和鲁西牛6个年龄组(n=238)进行了差异分析,结果表明,不同基因型在品种间存在极显著的差异(P < 0.01);鲁西牛各年龄组与各基因型间差异不显著(P > 0.05),但各种基因型间存在有着极显著的差异(P < 0.01)。结合各种基因型个体在不同年龄组间的变化趋势,AA 型个体可能具有相对较长的使用寿命。

Abstract: Paraoxonase-2 (PON2) gene production is an antioxygen for the metabolism of circulating triacylglycerols. It is considered to be a major candidate gene affecting fat deposition in blood vessel and human lifespan, respectively. In this study, direct sequencing method was used to detect the single nucleotide polymorphisms in the exons of PON2 gene; polymerase chain reaction-singlestrand composition polymorphism (PCR-SSCP) was applied to analyze the polymorphisms of exon 9 of the PON2 gene in 478 cattle that comprised of seven breeds, namely Luxi, Nanyang, Jinnan, Chinese Simmental, Holstein, Murrah buffalo and Nili-Ravi buffalo. Four single nucleotide polymorphism sites were discovered in exons, which had not caused the change of amino acids. A 167 bp long PCR product of exon 9 was detected with SSCP. BB genotype had one substitution mutant T98C. Except Luxi and Holstein, other five breeds were all at Hardy-Weinberg equilibrium (P > 0.05). In Luxi, Nanyang, Jinnan and Holstein, the polymorphisms information contents were moderate polymorphisms (0.25 <PIC< 0.50). Others were in low polymorphisms. AA genotype was not detected in Murrah buffalo and Nili-Ravi buffalo, while AA, AB and BB genotypes present in other five breeds. The predominated frequency of the genotypes were difference in these seven breeds, AA>AB>BB was in Luxi and Nanyang; AA/AB/BB was near to 1∶1∶1 in Jinnan; there was serious skewness of BB in Chinese Simmental, which was the predominated genotype and the allele B was the dominance allele; and in two Buffalo breeds, B allele was the superiority. According to statistical analyze with SAS 9.1 GLM procedure, there were significant difference between breeds and genotypes (P < 0.); and no significant difference were found among several age groups in Luxi cattle (n=238) between genotypes (P > 0.05), but significant difference among different genotypes was found (P < 0.01). Combination with the tendency of the development of the genotype of animals, the AA type will be the fitted one for longer lifespan.