[1] |
RIECHMANN J L, MEYEROWITZ E M. The AP2/EREBP family of plant transcription factors[J]. Biol Chem, 1998, 379(6):633-646.
|
[2] |
BALAJI S, BABU M M, IYER L M, et al. Discovery of the principal specific transcription factors of Apicomplexa and their implication for the evolution of the AP2-integrase DNA binding domains[J]. Nucleic Acids Res, 2005, 33(13):3994-4006.
|
[3] |
OBERSTALLER J, JOSEPH S J, KISSINGER J C. Genome-wide upstream motif analysis of Cryptosporidium parvum genes clustered by expression profile[J]. BMC Genomics, 2013, 14:516.
|
[4] |
HALL N, KARRAS M, RAINE J D, et al. A comprehensive survey of the Plasmodium life cycle by genomic, transcriptomic, and proteomic analyses[J]. Science, 2005, 307(5706):82-86.
|
[5] |
LINDNER S E, DE SILVA E K, KECK J L, et al. Structural determinants of DNA binding by a P. falciparum ApiAP2 transcriptional regulator[J]. J Mol Biol, 2010, 395(3):558-567.
|
[6] |
ARAVIND L, LANDSMAN D. AT-hook motifs identified in a wide variety of DNA-binding proteins[J]. Nucleic Acids Res, 1998, 26(19):4413-4421.
|
[7] |
JENINGA M D, QUINN J E, PETTER M. ApiAP2 transcription factors in apicomplexan parasites[J]. Pathogens, 2019, 8(2):47.
|
[8] |
CIUFFREDA L, ZOIKU F K, QUASHIE N B, et al. Estimation of parasite age and synchrony status in Plasmodium falciparum infections[J]. Sci Rep, 2020, 10(1):10925.
|
[9] |
ZANGHÌ G, VEMBAR S S, BAUMGARTEN S, et al. A specific PfEMP1 is expressed in P. falciparum sporozoites and plays a role in hepatocyte infection[J]. Cell Rep, 2018, 22(11):2951-2963.
|
[10] |
CAMPBELL T L, DE SILVA E K, OLSZEWSKI K L, et al. Identification and genome-wide prediction of DNA binding specificities for the ApiAP2 family of regulators from the malaria parasite[J]. PLoS Pathog, 2010, 6(10):e1001165.
|
[11] |
FLUECK C, BARTFAI R, NIEDERWIESER I, et al. A major role for the Plasmodium falciparum ApiAP2 protein PfSIP2 in chromosome end biology[J]. PLoS Pathog, 2010, 6(2):e1000784.
|
[12] |
BRYANT J M, BAUMGARTEN S, DINGLI F, et al. Exploring the virulence gene interactome with CRISPR/dCas9 in the human malaria parasite[J]. Mol Syst Biol, 2020, 16(8):e9569.
|
[13] |
SCHERF A, LOPEZ-RUBIO J J, RIVIERE L. Antigenic variation in Plasmodium falciparum[J]. Ann Rev Microbiol, 2008, 62:445-470.
|
[14] |
MARTINS R M, MACPHERSON C R, CLAES A, et al. An ApiAP2 member regulates expression of clonally variant genes of the human malaria parasite Plasmodium falciparum[J]. Sci Rep, 2017, 7(1):14042.
|
[15] |
YOUNG J A, JOHNSON J R, BENNER C, et al. In silico discovery of transcription regulatory elements in Plasmodium falciparum[J]. BMC Genomics, 2008, 9(1):70.
|
[16] |
IENGAR P, JOSHI N V. Identification of putative regulatory motifs in the upstream regions of co-expressed functional groups of genes in Plasmodium falciparum[J]. BMC Genomics, 2009, 10(1):18.
|
[17] |
ESSIEN K, STOECKERT C J Jr. Conservation and divergence of known apicomplexan transcriptional regulons[J]. BMC Genomics, 2010, 11(1):147.
|
[18] |
SANTOS J M, JOSLING G, ROSS P, et al. Red blood cell invasion by the malaria parasite is coordinated by the PfAP2-I transcription factor[J]. Cell Host Microbe, 2017, 21(6):731-741.
|
[19] |
TOENHAKE C G, FRASCHKA S A K, VIJAYABASKAR M S, et al. Chromatin accessibility-based characterization of the gene regulatory network underlying Plasmodium falciparum blood-stage development[J]. Cell Host Microbe, 2018, 23(4):557-569.e9.
|
[20] |
JOSLING G A, RUSSELL T J, VENEZIA J, et al. Dissecting the role of PfAP2-G in malaria gametocytogenesis[J]. Nat Commun, 2020, 11(1):1503.
|
[21] |
CARRINGTON E, COOIJMANS R H M, KELLER D, et al. The ApiAP2 factor PfAP2-HC is an integral component of heterochromatin in the malaria parasite Plasmodium falciparum[J]. iScience, 2021, 24(5):102444.
|
[22] |
VOSS T S, BOZDECH Z, BáRTFAI R. Epigenetic memory takes center stage in the survival strategy of malaria parasites[J]. Curr Opin Microbiol, 2014, 20:88-95.
|
[23] |
FORTUNY A, POLO S E. The response to DNA damage in heterochromatin domains[J]. Chromosoma, 2018, 127(3):291-300.
|
[24] |
MAO P, WYRICK J J. Organization of DNA damage, excision repair, and mutagenesis in chromatin:a genomic perspective[J]. DNA Repair (Amst), 2019, 81:102645.
|
[25] |
LLORÀ-BATLLE O, MICHEL-TODÓ L, WITMER K, et al. Conditional expression of PfAP2-G for controlled massive sexual conversion in Plasmodium falciparum[J]. Sci Adv, 2020, 6(24):eaaz5057.
|
[26] |
FRASCHKA S A, FILARSKY M, HOO R, et al. Comparative heterochromatin profiling reveals conserved and unique epigenome signatures linked to adaptation and development of malaria parasites[J]. Cell Host Microbe, 2018, 23(3):407-420.
|
[27] |
LOPEZ-RUBIO J J, MANCIO-SILVA L, SCHERF A. Genome-wide analysis of heterochromatin associates clonally variant gene regulation with perinuclear repressive centers in malaria parasites[J]. Cell Host Microbe, 2009, 5(2):179-190.
|
[28] |
PÉREZ-TOLEDO K, ROJAS-MEZA A P, MANCIO-SILVA L, et al. Plasmodium falciparum heterochromatin protein 1 binds to tri-methylated histone 3 lysine 9 and is linked to mutually exclusive expression of var genes[J]. Nucleic Acids Res, 2009, 37(8):2596-2606.
|
[29] |
BRANCUCCI N M B, BERTSCHI N L, ZHU L, et al. Heterochromatin protein 1 secures survival and transmission of malaria parasites[J]. Cell Host Microbe, 2014, 16(2):165-176.
|
[30] |
BIASINI M, SCHMIDT T, BIENERT S, et al. OpenStructure:an integrated software framework for computational structural biology[J]. Acta Crystallogr D Biol Crystallogr, 2013, 69(Pt 5):701-709.
|
[31] |
SIERRA-MIRANDA M, VEMBAR S S, DELGADILLO D M, et al. PfAP2Tel, harbouring a non-canonical DNA-binding AP2 domain, binds to Plasmodium falciparum telomeres[J]. Cell Microbiol, 2017, 19(9):e12742.
|
[32] |
PATTABIRAMAN S, BAUMANN C, GUISADO D, et al. Mouse BRWD1 is critical for spermatid postmeiotic transcription and female meiotic chromosome stability[J]. J Cell Biol, 2015, 208(1):53-69.
|
[33] |
VAN BILJON R, NIEMAND J, VAN WYK R, et al. Inducing controlled cell cycle arrest and re-entry during asexual proliferation of Plasmodium falciparum malaria parasites[J]. Sci Rep, 2018, 8(1):16581.
|