[1] |
陈辉.猪重要经济性状选择的遗传进展[J].猪业科学, 2019, 36(1):116-118.CHEN H.Genetic progress in the selection of important economic traits in pigs[J].Swine Industry Science, 2019, 36(1):116-118.(in Chinese)
|
[2] |
MATHER K.Variation and selection of polygenic characters[J].J Genet, 1941, 41(2-3):159-193.
|
[3] |
RISCH N, MERIKANGAS K.The future of genetic studies of complex human diseases[J].Science, 1996, 273(5281):1516-1517.
|
[4] |
HIRSCHHORN J N, DALY M J.Genome-wide association studies for common diseases and complex traits[J].Nat Rev Genet, 2005, 6(2):95-108.
|
[5] |
汤香, 何俊, 蒋隽.全基因组关联分析在畜禽中的研究进展[J].畜牧与兽医, 2020, 52(5):147-152.TANG X, HE J, JIANG J.Progress in research on whole genome association studies in livestock and poultry[J].Animal Husbandry & Veterinary Medicine, 2020, 52(5):147-152.(in Chinese)
|
[6] |
石丽丹, 王小女, 张孟浩, 等.大白母猪乳头数全基因组关联分析[J].中国畜牧杂志, 2021, 57(S1):69-75, 83.SHI L D, WANG X N, ZHANG M H, et al.Genome wide association analysis of teat number in Yorkshire Pig[J].Chinese Journal of Animal Science, 2021, 57(S1):69-75, 83.(in Chinese)
|
[7] |
胡斌, 蔡淑芳, 孟繁明, 等.藏猪出生重的全基因组关联分析[J].广东畜牧兽医科技, 2021, 46(6):40-44.HU B, CAI S F, MENG F M, et al.Genome-wide association study of birth weight in Tibetan pigs[J].Guangdong Journal of Animal and Veterinary Science, 2021, 46(6):40-44.(in Chinese)
|
[8] |
KORTE A, FARLOW A.The advantages and limitations of trait analysis with GWAS:a review[J].Plant Methods, 2013, 9(4):29.
|
[9] |
WANG H, MISZTAL I, AGUILAR I, et al.Genome-wide association mapping including phenotypes from relatives without genotypes[J].Genet Res (Camb), 2012, 94(2):73-83.
|
[10] |
HOWARD J T, JIAO S H, TIEZZI F, et al.Genome-wide association study on legendre random regression coefficients for the growth and feed intake trajectory on Duroc Boars[J].BMC Genet, 2015, 16:59.
|
[11] |
ZHANG Z, ZHANG Z, OYELAMI F O, et al.Identification of genes related to intramuscular fat independent of backfat thickness in Duroc pigs using single-step genome-wide association[J].Anim Genet, 2021, 52(1):108-113.
|
[12] |
R CORE TEAM.R:a language and environment for statistical computing[CP/OL].Vienna, Austria:R Core Team, 2022.
|
[13] |
PURCELL S, NEALE B, TODD-BROWN K, et al.PLINK:a tool set for whole-genome association and population-based linkage analyses[J].Am J Hum Genet, 2007, 81(3):559-575.
|
[14] |
HAMMAMI H, REKIK B, SOYEURT H, et al.BLUPF90 and related programs (BGF90)[J].J Anim Breed Genet, 2009, 126(5):366-377.
|
[15] |
JENSEN J, MÄNTYSAARI E A, MADSEN P, et al.Residual maximum likelihood estimation of (Co)variance components in multivariate mixed linear models using average information[J].J Indian Soc Agric Stat, 1997, 49:215-236.
|
[16] |
CHRISTENSEN O F, LUND M S.Genomic prediction when some animals are not genotyped[J].Genet Select Evol, 2010, 42(1):2.
|
[17] |
VANRADEN P M.Efficient methods to compute genomic predictions[J].J Dairy Sci, 2008, 91(11):4414-4423.
|
[18] |
FANGMANN A, SHARIFI R A, HEINKEL J, et al.Empirical comparison between different methods for genomic prediction of number of piglets born alive in moderate sized breeding populations[J].J Anim Sci, 2017, 95(4):1434-1443.
|
[19] |
AGUILAR I, MISZTAL I, TSURUTA S, et al.PREGSF90-POSTGSF90:Computational tools for the implementation of single-step genomic selection and genome-wide association with Ungenotyped individuals in BLUPF90 programs[C]//Proceedings of the 10th World Congress of Genetics Applied to Livestock Production.2014.
|
[20] |
ZHANG Z, LIU J F, DING X D, et al.Best linear unbiased prediction of genomic breeding values using a trait-specific marker-derived relationship matrix[J].PLoS One, 2010, 5(9):e12648.
|
[21] |
WANG H Y, MISZTAL I, AGUILAR I, et al.Genome-wide association mapping including phenotypes from relatives without genotypes in a single-step (ssGWAS) for 6-week body weight in broiler chickens[J].Front Genet, 2014, 5:134.
|
[22] |
MARQUES D B D, BASTIAANSEN J W M, BROEKHUIJSE M L W J, et al.Weighted single-step GWAS and gene network analysis reveal new candidate genes for semen traits in pigs[J].Genet Sel Evol, 2018, 50(1):40.
|
[23] |
VERONEZE R, BASTIAANSEN J W, KNOL E F, et al.Linkage disequilibrium patterns and persistence of phase in purebred and crossbred pig (Sus scrofa) populations[J].BMC Genet, 2014, 15:126.
|
[24] |
ZHUANG Z, DING R, QIU Y, et al.A large-scale genome-wide association analysis reveals QTL and candidate genes for intramuscular fat content in Duroc pigs[J].Anim Genet, 2021, 52(4):518-522.
|
[25] |
GAO N, CHEN Y L, LIU X H, et al.Weighted single-step GWAS identified candidate genes associated with semen traits in a Duroc boar population[J].BMC Genomics, 2019, 20(1):797.
|
[26] |
SHERMAN B T, HAO M, QIU J, et al.DAVID:a web server for functional enrichment analysis and functional annotation of gene lists (2021 update)[J].Nucleic Acids Res, 2022, 50(W1):W216-W221.
|
[27] |
HUANG D W, SHERMAN B T, LEMPICKI R A.Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources[J].Nat Protocols, 2009, 4(1):44-57.
|
[28] |
张广杰.大白猪主要生长性状遗传参数估计及其与相关基因多态性的关联分析[D].南宁:广西大学, 2019.ZHANG G J.Estimation of genetic patameters of major growth traits in Yorkshire pig and its association with related gene pilymorphisms[D]. Nanning:Guangxi University, 2019.(in Chinese)
|
[29] |
黄叶.大白猪胴体性状全基因组关联分析及遗传参数估计[D].南宁:广西大学, 2020.HUANG Y.Genome wide association analysis and genetic parameter estimation of carcass traits in Yorkshire pigs[D]. Nanning:Guangxi University, 2020.(in Chinese)
|
[30] |
贺婕妤, 王斌虎, 廖柱, 等.长白和大白猪主要生长性状的遗传参数估计[J].畜牧兽医学报, 2021, 52(8):2115-2123.HE J Y, WANG B H, LIAO Z, et al.Estimation of genetic parameters of main growth traits in Landrace and Large White pigs[J].Acta Veterinaria et Zootechnica Sinica, 2021, 52(8):2115-2123.(in Chinese)
|
[31] |
SUWANNASING R, DUANGJINDA M, BOONKUM W, et al.The identification of novel regions for reproduction trait in landrace and large white pigs using a single step genome-wide association study[J].Asian-Australas J Anim Sci, 2018, 31(12):1852-1862.
|
[32] |
RUAN D L, ZHUANG Z W, DING R R, et al.Weighted single-step GWAS identified candidate genes associated with growth traits in a Duroc pig population[J].Genes (Basel), 2021, 12(1):117.
|
[33] |
ZHANG X, XUE C Y, LIN J N, et al.Interrogation of nonconserved human adipose lincRNAs identifies a regulatory role of linc-ADAL in adipocyte metabolism[J].Sci Transl Med, 2018, 10(446):eaar5987.
|
[34] |
ZHANG D W, WU W J, HUANG X, et al.Comparative analysis of gene expression profiles in differentiated subcutaneous adipocytes between Jiaxing Black and Large White pigs[J].BMC Genomics, 2021, 22(1):61.
|
[35] |
CHEN S R, AN J Y, LIAN L, et al.Polymorphisms in AKT3, FIGF, PRKAG3, and TGF-β genes are associated with myofiber characteristics in chickens[J].Poult Sci, 2013, 92(2):325-330.
|
[36] |
OCARANZA P, LAMMOGLIA J J, ÍÑIGUEZ G, et al.Effects of thyroid hormone on the GH signal transduction pathway[J]. Growth Horm IGF Res, 2014, 24(1):42-46.
|
[37] |
ZHAO X Y, WANG C, WANG Y P, et al.Comparative gene expression profiling of muscle reveals potential candidate genes affecting drip loss in pork[J].BMC Genet, 2019, 20(1):89.
|
[38] |
SAMSEL Z, SEKRETARSKA J, OSINKA A, et al.Central apparatus, the molecular kickstarter of ciliary and flagellar nanomachines[J].Int J Mol Sci, 2021, 22(6):3013.
|
[39] |
唐益, 周林, 周宇鑫, 等.精子鞭毛蛋白以及精子表面蛋白17的研究进展[J].浙江海洋大学学报:自然科学版, 2021, 40(3):260-265.TANG Y, ZHOU L, ZHOU Y X, et al.Research progress of sperm flagellar protein and sperm surface protein 17[J].Journal of Zhejiang Ocean University:Natural Science, 2021, 40(3):260-265.(in Chinese)
|
[40] |
ZHAO X, MO D L, LI A N, et al.Comparative analyses by sequencing of transcriptomes during skeletal muscle development between pig breeds differing in muscle growth rate and fatness[J].PLoS One, 2011, 6(5):e19774.
|
[41] |
李若梅, 翁梦佳, 孙一丹, 等.Fgf9在小鼠下颌骨发育软骨成骨及膜内成骨过程中的作用探讨[J].中国口腔颌面外科杂志, 2021, 19(4):309-314.LI R M, WENG M J, SUN Y D, et al.Fgf9 regulated murine mandibular development by promoting endochondral and intramembranous ossification[J].China Journal of Oral and Maxillofacial Surgery, 2021, 19(4):309-314.(in Chinese)
|
[42] |
SENTCHORDI-MONTANÉ L, DIAZ-GONZALEZ F, CATEDRA-VALLES E V, et al.Identification of the third FGF9 variant in a girl with multiple synostosis-comparison of the genotype:phenotype of FGF9 variants in humans and mice[J].Clin Genet, 2021, 99(2):309-312.
|
[43] |
ALFADHEL M, UMAIR M, ALMUZZAINI B, et al.Identification of the TTC26 splice variant in a novel complex ciliopathy syndrome with biliary, renal, neurological, and skeletal manifestations[J].Mol Syndromol, 2021, 12(3):133-140.
|
[44] |
WANG Z, IIDA A, MIYAKE N, et al.Axial spondylometaphyseal dysplasia is caused by C21orf2 mutations[J].PLoS One, 2016, 11(3):e0150555.
|
[45] |
GU Y R, LI M Z, ZHANG K, et al.Evaluation of endogenous control genes for gene expression studies across multiple tissues and in the specific sets of fat- and muscle-type samples of the pig[J].J Anim Breed Genet, 2011, 128(4):319-325.
|