畜牧兽医学报 ›› 2008, Vol. 39 ›› Issue (4): 393-398.doi:

• 遗传繁育 • 上一篇    下一篇

猪肺表面活性蛋白A的DNA全序列克隆与生物信息学分析

乔莉娟,王立贤,苏振环,颜华   

  1. 中国农业科学院北京畜牧兽医研究所,北京 100094
  • 收稿日期:1900-01-01 修回日期:1900-01-01 出版日期:2008-04-24 发布日期:2008-04-24

Porcine Lung Surfactant Protein A: Complete DNA Cloning and Bioinformatics Analysis

QIAO Li-juan, WANG Li-xian,SU Zhen-huan,YAN Hua   

  1. Institute of Animal Science, Chinese Academy of Agricultural Sciences, Beijing 100094, China
  • Received:1900-01-01 Revised:1900-01-01 Online:2008-04-24 Published:2008-04-24

摘要: 猪肺表面活性蛋白A(Porcine surfactant protein A,SP-A)是猪肺泡表面活性蛋白中含量最多、最先被发现具有炎症免疫调节功能的表面活性蛋白。本研究利用比较基因组学方法,设计了6对引物进行PCR扩增,克隆测序后进行拼接,获得了长为4 037 bp猪SP-A 基因的全序列(gi: DQ985806)。经生物信息学分析,此序列包含了猪SP-A基因启动子区,含有1个747 bp的完整开放阅读框,编码248个氨基酸;预测猪SP-A蛋白理论分子量约为26.37 ku,蛋白的等电点为5.20;在1~20位氨基酸可能是信号肽序列;在大约1~20、120~135、145~160位氨基酸存在疏水性区域;跨膜结构分析表明此蛋白所有氨基酸都位于膜表面;并且发现猪SP-A蛋白同人SP-A蛋白一样也含有保守的碳水化合物识别区、胶原样区域和茎区。本结果为进一步对SP-A与猪呼吸道疾病相关性的研究奠定了基础。

Abstract: Porcine surfactant protein A (SP-A) is the most in content and the first found in porcine surfactant protein which has the function of regulating inflammation and immune. The complete DNA sequence of porcine SP-A was attained by designing six primers during PCR cloning in this study. The length of the complete DNA sequence of porcine SP-A was 4 037 bp (gi: DQ985806) including the promoter regions , a 747 bp open reading frame coding 248 amino acid(aa). The molecular weight and the isoelectric point of porcine surfactant protein A was 26.37 ku and 5.20, respectively. It’s predicted the 1-20 aa was signal peptide sequence, and the 1-20 aa,120-135 aa, 145-160 aa was hydrophobicity domain; porcine surfactant protein A was in the surface of membrane by transmembrane helices analysis. Meanwhile, as human SP-A, the porcine SP-A has conservative collagen-like region, neck region, and carbohydrate recognition domain . The present results would contribute to study on the association between SP-A and porcine respiration disease .