畜牧兽医学报 ›› 2009, Vol. 40 ›› Issue (7): 1112-1119.doi:

• 研究简报 • 上一篇    下一篇

鸭瘟病毒VP26基因克隆和分子特性分析

蔡铭升1,程安春1,2*,汪铭书1,2,朱德康1,2,罗启慧2,招丽婵1,陈孝跃1
  

  1. 1. 四川农业大学动物医学院禽病防治研究中心,雅安 625014;2. 动物疫病与人类健康四川省重点实验室,雅安 625014
  • 收稿日期:1900-01-01 修回日期:1900-01-01 出版日期:2009-07-24 发布日期:2009-07-24
  • 通讯作者: 程安春

Cloning and Molecular Characterization of VP26 Gene of Duck Plauge Virus

CAI Mingsheng 1, CHENG Anchun 1,2*, WANG Mingshu 1,2, ZHU Dekang 1,2, LUO Qihui 2, ZHAO Lichan 1, CHEN Xiaoyue 1
  

  1. 1. Avian Diseases Research Center, College of Veterinary Medicine of Sichuan Agricultural University, Yaan 625014, China; 2. Key Laboratory of Animal Diseases and Human Health of Sichuan Province, Ya’an 625014, China
  • Received:1900-01-01 Revised:1900-01-01 Online:2009-07-24 Published:2009-07-24
  • Contact: CHENG Anchun

摘要: 利用作者实验室已构建的DPV CHv株基因文库重组质粒的DNA测序信息,结合NCBI的ORF Finder和BLAST工具分析得到了编码该病毒VP26蛋白基因(UL35)的ORF,然后采用PCR扩增出了VP26基因并将其克隆到pMD18T载体上,经PCR和酶切鉴定以及进一步的核酸斑点杂交试验证实该基因即为DPV的VP26基因。分子特性分析表明:该基因大小为 354 bp,编码117 aa,包含1个保守结构域,为Herpes_UL35,与小衣壳蛋白家族相关并在Herpes_UL35基因编码蛋白之间高度保守,而且DPV VP26蛋白与GenBank上多种α疱疹病毒同源蛋白的核酸和氨基酸序列具有较高的同源性。系统进化树分析表明,DPV在分类地位上归属于Alphaherpesvirus亚科,而且有可能属于新的属。另外,亚细胞定位分析表明,VP26主要定位于细胞核中。密码子偏爱性分析结果显示,编码VP26相同氨基酸的不同密码子使用频率有较大的差异,DPV VP26与大肠杆菌、酵母和人的密码子使用偏爱性差异分别有18、19和25个。上述研究结果为进一步研究DPV VP26蛋白的功能和作用机理提供分子生物学依据。

Abstract: A complete open reading frame (ORF) of UL35 gene encoding the protein VP26 of duck plauge virus (DPV) was obtained according to the DNA sequencing information of a recombinant plasmid of the DPV CHv strain gene library constructed in our laboratory combining together with the analysis of ORF Finder and BLAST tool of NCBI. Then the DPV VP26 gene was cloned into pMD18T,and was strongly confirmed by PCR amplification, restriction digestion and oligonucleotide probe hybridization. Molecular characterization analysis indicated that the DPV VP26 gene was composed of 354 nucleotides,and encoding a polypeptide of 117 amino acid residues, which had a Herpes_UL35 conserved domain related to small nucleocapsid protein family and highly conserved among the Herpes_UL35 proteins. Moreover, the nucleic acid and amino acid sequence of DPV VP26 had higher homology with its homologous protein of Alphaherpesvirus than others. Phylogenetic tree analysis showed that on taxonomic status the DPV could be grouped in Alphaherpesvirus subfamily, and might be a new genus of Alphaherpesvirus. Subcellular location analysis demonstrated that the VP26 mainly located in nucleus. Besides, condon preference analysis demonstrated that the alternative codons for the same amino acid in VP26 had distinctly different frequency and the DPV VP26 had 18, 19 and 25 codons’ frequency evidently disagreeing with E. coli, yeast and human, respectively. These results provide a molecular biology evidence for the further study on the function and mechanism of DPV VP26.