畜牧兽医学报 ›› 2007, Vol. 38 ›› Issue (5): 432-436.doi:

• 遗传繁育 • 上一篇    下一篇

猪CTSD全长cDNA的克隆和表达分析

梅盈洁;李加琪;陈瑶生;李晓筠;朱良瑞;凌飞;王翀;张豪   

  1. 华南农业大学动物科学学院
  • 收稿日期:1900-01-01 修回日期:1900-01-01 出版日期:2007-05-25 发布日期:2007-05-25

Cloning and Expression of Porcine Cathepsin D Gene Full-length cDNA

MEI Ying-Jie1; LI Jia-Qi2;CHEN Yao-Sheng;LI Xiao-Yun;ZHU Liang-rui;LING Fei;WANG Chong;ZHANG Hao,   

  1. College of Animal science, South China Agricultural University
  • Received:1900-01-01 Revised:1900-01-01 Online:2007-05-25 Published:2007-05-25

摘要: 以人CTSD mRNA全长序列为基序,在db EST库中搜索同源性大于80%、重叠大于40个碱基的猪EST下载经Seqman软件装配后,利用RT-PCR扩增到猪CTSD基因部分cDNA序列。进一步通过RACE技术获得cDNA全长(GenBank收录号为DQ018727),包括93 bp 5’UTR区、706 bp 3’UTR区和1233 bp ORF,编码410个氨基酸残基。其编码区与人、鼠、牛、羊CTSD同源性分别为87.9%、78.2% 、86.6%和85.0%,氨基酸序列与已测序的猪、人、鼠、、牛、羊氨基酸序列同源性分别为97.4%、86.6%、80.1%、86.0%、84.7%。疏水性分析和信号肽预测发现猪CTSD氨基酸序列存在至少7个疏水性区域,信号肽位点为第1-20个氨基酸残基。在NCBI进行Blast P搜索结果显示猪CTSD氨基酸结构中含有Asn(Asparagine,天门冬酰胺)结构域,与天冬氨酸蛋白酶3D结构同源性高达99.7%,具有真核生物天冬氨酸蛋白酶的典型结构。以猪多组织RNA池为模板,以1026 bp部分 cDNA序列作为杂交探针进行Northern杂交得到一条2000 bp左右特异条带,从而验证了RACE产物为全长cDNA并揭示该基因只有一个转录本。为了研究猪CTSD基因在体内表达的特点,采用半定量RT-PCR对CTSD基因在猪10个组织中的表达进行研究,结果表明在10个组织中均有表达,且表达量与β-actin内参接近。

Abstract: Cathepsin D is a major, lysosomal aspartic proteinase, which has important function in proteins degradation. In this study through in silico cloning and RACE, the full-length cDNA of cathepsin D was isolated and sequenced. Sequence analysis revealed a 2032 bp cDNA containing a 93 bp 5’-untranslated region, a 706 bp 3’-untranslated region and a 1233 bp open reading frame coding 410 amino acid ( Genbank accession number:DQ018727). By means of bioinformatics and internet resources , The deduced 410 amino acids of cathepsin D was predicted to contain an Asn (Asparagine)domain, a number of transmembrane regions, a signal peptide with 20 amino acid. And 3D structure of pig cathepsin D was similar to mammalian cathepsin D(alignment score is 99.7%). Northern hybridization result revealed this gene has only one transcript and expression analysis indicated that cathepsin D was expressed widely and there was no difference within the four pig breeds,and no difference among the tissues.